Gene
Entrez ID Entrez Gene ID - the GENE ID in NCBI Gene database.
9380
Gene name Gene Name - the full gene name approved by the HGNC.
Glyoxylate and hydroxypyruvate reductase
Gene symbol Gene Symbol - the official gene symbol approved by the HGNC.
GRHPR
Synonyms (NCBI Gene) Gene synonyms aliases
GLXR, GLYD, PH2
Chromosome Chromosome number
9
Chromosome location Chromosomal Location - indicates the cytogenetic location of the gene or region on the chromosome.
9p13.2
Summary Summary of gene provided in NCBI Entrez Gene.
This gene encodes an enzyme with hydroxypyruvate reductase, glyoxylate reductase, and D-glycerate dehydrogenase enzymatic activities. The enzyme has widespread tissue expression and has a role in metabolism. Type II hyperoxaluria is caused by mutations in
SNPs SNP information provided by dbSNP.
SNP ID Visualize variation Clinical significance Consequence
rs309458 A>C,G,T Conflicting-interpretations-of-pathogenicity, uncertain-significance, benign Coding sequence variant, non coding transcript variant, synonymous variant
rs34302950 TCTCTCTCTC>-,TC,TCTC,TCTCTC,TCTCTCTC,TCTCTCTCTCTC,TCTCTCTCTCTCTC,TCTCTCTCTCTCTCTC,TCTCTCTCTCTCTCTCTCTCTCTC,TCTCTCTCTCTCTCTCTCTCTCTCTC Conflicting-interpretations-of-pathogenicity, benign Intron variant
rs80356708 G>- Likely-pathogenic, pathogenic Frameshift variant, non coding transcript variant, 5 prime UTR variant, intron variant, coding sequence variant
rs111256477 G>C,T Likely-pathogenic, uncertain-significance Splice donor variant
rs119490108 C>T Pathogenic Non coding transcript variant, 5 prime UTR variant, stop gained, intron variant, coding sequence variant
miRNA miRNA information provided by mirtarbase database.
miRTarBase ID miRNA Experiments Reference
MIRT040697 hsa-miR-92b-3p CLASH 23622248
MIRT035939 hsa-miR-1180-3p CLASH 23622248
MIRT1034150 hsa-miR-1228 CLIP-seq
MIRT1034151 hsa-miR-204 CLIP-seq
MIRT1034152 hsa-miR-211 CLIP-seq
Gene ontology (GO) Gene ontology information of associated ontologies with gene provided by GO database.
GO ID Ontology Definition Evidence Reference
GO:0005737 Component Cytoplasm IDA
GO:0005782 Component Peroxisomal matrix TAS
GO:0005829 Component Cytosol IBA 21873635
GO:0007588 Process Excretion IMP 10484776
GO:0008465 Function Glycerate dehydrogenase activity IBA 21873635
Other IDs Other ids provides unique ids of gene in databases such as OMIM, HGNC, ENSEMBLE.
MIM HGNC e!Ensembl
604296 4570 ENSG00000137106
Protein
UniProt ID Q9UBQ7
Protein name Glyoxylate reductase/hydroxypyruvate reductase (EC 1.1.1.79) (EC 1.1.1.81)
Protein function Enzyme with hydroxy-pyruvate reductase, glyoxylate reductase and D-glycerate dehydrogenase enzymatic activities. Reduces hydroxypyruvate to D-glycerate, glyoxylate to glycolate, oxidizes D-glycerate to hydroxypyruvate. {ECO:0000269|PubMed:104847
PDB 2GCG , 2H1S , 2Q50 , 2WWR
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF00389 2-Hacid_dh 9 327 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain Domain
PF02826 2-Hacid_dh_C 116 295 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Domain
Tissue specificity TISSUE SPECIFICITY: Ubiquitous. Most abundantly expressed in the liver. {ECO:0000269|PubMed:10679197}.
Sequence
Sequence length 328
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  KEGG   Reactome
  Glycine, serine and threonine metabolism
Pyruvate metabolism
Glyoxylate and dicarboxylate metabolism
Metabolic pathways
  Glyoxylate metabolism and glycine degradation
Associated diseases Disease information provided by ClinVar, GenCC, and GWAS databases.
Causal
Disease term Disease name dbSNP ID References
Hyperoxaluria Hyperoxaluria, Primary Hyperoxaluria, Primary hyperoxaluria type 2 rs397509360, rs138207257, rs2041105506, rs267606763, rs267606764, rs80356708, rs119490108, rs121908520, rs121908521, rs121908522, rs121908523, rs121908524, rs121908525, rs121908526, rs121908527
View all (238 more)
24116921, 25525159, 17510093, 25629080, 10484776, 14635115, 25644115, 16306119, 27604308, 18560364, 11477177, 11030416, 12185464, 15327387
Nephronophthisis NEPHROLITHIASIS, CALCIUM OXALATE rs62635288, rs267607116, rs201893408, rs267607117, rs202149403, rs118204032, rs121918244, rs750962965, rs1474058708, rs119456959, rs119456960, rs119456961, rs119456962, rs267606916, rs137852856
View all (190 more)
Prostate cancer Malignant neoplasm of prostate rs121909139, rs121909140, rs121909141, rs121909142, rs121909143, rs606231169, rs606231170, rs137852584, rs137852578, rs137852580, rs137852581, rs137852582 17013881
Renal insufficiency Renal Insufficiency rs1596536873
Associations from Text Mining
Disease Name Relationship Type References
Glioma Associate 37952042
Hyperoxaluria Associate 11135054, 12110000, 18951670, 28569194
Hyperoxaluria Primary Associate 11135054, 32221050, 35661454, 36151119, 40225159
Nephrocalcinosis Associate 28569194
Obesity Associate 28274171
Philadelphia Chromosome Associate 15327387
Primary hyperoxaluria type 1 Associate 20797690
Primary hyperoxaluria type 2 Associate 25410531, 28569194
Primary hyperoxaluria type 2 Inhibit 28569194