Gene Details | GeDiPNet - Complete Gene Info, Disease Associations & Pathways

Gene Gene miRNA Transcription factors Gene ontology Other IDs Protein Pathways Associated diseases
Entrez ID Entrez Gene ID - the GENE ID in NCBI Gene database.	9356
Gene name Gene Name - the full gene name approved by the HGNC.	Solute carrier family 22 member 6
Gene symbol Gene Symbol - the official gene symbol approved by the HGNC.	SLC22A6
Synonyms (NCBI Gene) Gene synonyms aliases	HOAT1, OAT1, PAHT, ROAT1
Chromosome Chromosome number	11
Chromosome location Chromosomal Location - indicates the cytogenetic location of the gene or region on the chromosome.	11q12.3
Summary Summary of gene provided in NCBI Entrez Gene.	The protein encoded by this gene is involved in the sodium-dependent transport and excretion of organic anions, some of which are potentially toxic. The encoded protein is an integral membrane protein and may be localized to the basolateral membrane. Four

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miRTarBase ID	miRNA	Experiments	Reference
MIRT646399	hsa-miR-296-3p	HITS-CLIP	23824327
MIRT646398	hsa-miR-1470	HITS-CLIP	23824327
MIRT646397	hsa-miR-4667-3p	HITS-CLIP	23824327
MIRT646396	hsa-miR-6832-3p	HITS-CLIP	23824327
MIRT646395	hsa-miR-6734-3p	HITS-CLIP	23824327
MIRT646393	hsa-miR-4287	HITS-CLIP	23824327
MIRT646394	hsa-miR-4685-3p	HITS-CLIP	23824327
MIRT646392	hsa-miR-659-5p	HITS-CLIP	23824327
MIRT646391	hsa-miR-8065	HITS-CLIP	23824327
MIRT646390	hsa-miR-642a-5p	HITS-CLIP	23824327
MIRT646389	hsa-miR-204-5p	HITS-CLIP	23824327
MIRT646388	hsa-miR-211-5p	HITS-CLIP	23824327
MIRT646387	hsa-miR-2909	HITS-CLIP	23824327
MIRT646386	hsa-miR-5193	HITS-CLIP	23824327
MIRT646385	hsa-miR-660-3p	HITS-CLIP	23824327
MIRT646384	hsa-miR-877-3p	HITS-CLIP	23824327
MIRT646383	hsa-miR-1236-3p	HITS-CLIP	23824327
MIRT646382	hsa-miR-581	HITS-CLIP	23824327
MIRT646381	hsa-miR-6748-5p	HITS-CLIP	23824327
MIRT646380	hsa-miR-6793-5p	HITS-CLIP	23824327
MIRT646379	hsa-miR-3911	HITS-CLIP	23824327
MIRT646378	hsa-miR-644a	HITS-CLIP	23824327
MIRT646377	hsa-miR-4691-5p	HITS-CLIP	23824327
MIRT646376	hsa-miR-6792-3p	HITS-CLIP	23824327
MIRT646375	hsa-miR-6749-3p	HITS-CLIP	23824327
MIRT646374	hsa-miR-7111-3p	HITS-CLIP	23824327
MIRT646373	hsa-miR-6780a-3p	HITS-CLIP	23824327
MIRT646372	hsa-miR-6881-3p	HITS-CLIP	23824327
MIRT646371	hsa-miR-6759-5p	HITS-CLIP	23824327
MIRT646370	hsa-miR-6818-5p	HITS-CLIP	23824327
MIRT646369	hsa-miR-147a	HITS-CLIP	23824327
MIRT646368	hsa-miR-670-3p	HITS-CLIP	23824327
MIRT646367	hsa-miR-1238-3p	HITS-CLIP	23824327
MIRT646399	hsa-miR-296-3p	HITS-CLIP	23824327
MIRT646398	hsa-miR-1470	HITS-CLIP	23824327
MIRT646397	hsa-miR-4667-3p	HITS-CLIP	23824327
MIRT646396	hsa-miR-6832-3p	HITS-CLIP	23824327
MIRT646395	hsa-miR-6734-3p	HITS-CLIP	23824327
MIRT646393	hsa-miR-4287	HITS-CLIP	23824327
MIRT646394	hsa-miR-4685-3p	HITS-CLIP	23824327
MIRT646392	hsa-miR-659-5p	HITS-CLIP	23824327
MIRT646391	hsa-miR-8065	HITS-CLIP	23824327
MIRT646390	hsa-miR-642a-5p	HITS-CLIP	23824327
MIRT646389	hsa-miR-204-5p	HITS-CLIP	23824327
MIRT646388	hsa-miR-211-5p	HITS-CLIP	23824327
MIRT646387	hsa-miR-2909	HITS-CLIP	23824327
MIRT646386	hsa-miR-5193	HITS-CLIP	23824327
MIRT646385	hsa-miR-660-3p	HITS-CLIP	23824327
MIRT646384	hsa-miR-877-3p	HITS-CLIP	23824327
MIRT646383	hsa-miR-1236-3p	HITS-CLIP	23824327
MIRT646382	hsa-miR-581	HITS-CLIP	23824327
MIRT646381	hsa-miR-6748-5p	HITS-CLIP	23824327
MIRT646380	hsa-miR-6793-5p	HITS-CLIP	23824327
MIRT646379	hsa-miR-3911	HITS-CLIP	23824327
MIRT646378	hsa-miR-644a	HITS-CLIP	23824327
MIRT646377	hsa-miR-4691-5p	HITS-CLIP	23824327
MIRT646376	hsa-miR-6792-3p	HITS-CLIP	23824327
MIRT646375	hsa-miR-6749-3p	HITS-CLIP	23824327
MIRT646374	hsa-miR-7111-3p	HITS-CLIP	23824327
MIRT646373	hsa-miR-6780a-3p	HITS-CLIP	23824327
MIRT646372	hsa-miR-6881-3p	HITS-CLIP	23824327
MIRT646371	hsa-miR-6759-5p	HITS-CLIP	23824327
MIRT646370	hsa-miR-6818-5p	HITS-CLIP	23824327
MIRT646369	hsa-miR-147a	HITS-CLIP	23824327
MIRT646368	hsa-miR-670-3p	HITS-CLIP	23824327
MIRT646367	hsa-miR-1238-3p	HITS-CLIP	23824327

Transcription factors

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Transcription factor	Regulation	Reference
HNF4A	Unknown	17344191

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GO ID	Ontology	Definition	Evidence	Reference
GO:0005452	Function	Inorganic anion exchanger activity	IDA	15037815
GO:0005515	Function	Protein binding	IPI	16189514, 19060904
GO:0005886	Component	Plasma membrane	TAS
GO:0005887	Component	Integral component of plasma membrane	IDA	14749323
GO:0005901	Component	Caveola	IEA
GO:0008514	Function	Organic anion transmembrane transporter activity	IDA	9950961, 10049739, 16024787
GO:0008514	Function	Organic anion transmembrane transporter activity	IMP	22169006
GO:0015301	Function	Anion:anion antiporter activity	IEA
GO:0015347	Function	Sodium-independent organic anion transmembrane transporter activity	IBA	21873635
GO:0015698	Process	Inorganic anion transport	IEA
GO:0015711	Process	Organic anion transport	IBA	21873635
GO:0015711	Process	Organic anion transport	IDA	9950961, 10049739
GO:0015711	Process	Organic anion transport	IMP	22169006
GO:0015742	Process	Alpha-ketoglutarate transport	IDA	9950961
GO:0016323	Component	Basolateral plasma membrane	IDA	9887087, 15037815, 27053689
GO:0031404	Function	Chloride ion binding	IEA
GO:0031427	Process	Response to methotrexate	IEA
GO:0032991	Component	Protein-containing complex	IEA
GO:0042802	Function	Identical protein binding	IEA
GO:0043252	Process	Sodium-independent organic anion transport	IEA
GO:0070062	Component	Extracellular exosome	HDA	19056867
GO:0097254	Process	Renal tubular secretion	IMP	22169006
GO:0097254	Process	Renal tubular secretion	NAS	9887087, 10049739
GO:0098656	Process	Anion transmembrane transport	IEA

MIM	HGNC	e!Ensembl
607582	10970	ENSG00000197901

Protein

UniProt ID

Q4U2R8

Protein name

Solute carrier family 22 member 6 (Organic anion transporter 1) (hOAT1) (PAH transporter) (hPAHT) (Renal organic anion transporter 1) (hROAT1)

Protein function

Secondary active transporter that functions as a Na(+)-independent organic anion (OA)/dicarboxylate antiporter where the uptake of one molecule of OA into the cell is coupled with an efflux of one molecule of intracellular dicarboxylate such as

Family and domains

Pfam

Accession	ID	Position in sequence	Description	Type
PF00083	Sugar_tr	101 → 518	Sugar (and other) transporter	Family

Tissue specificity

TISSUE SPECIFICITY: Strongly expressed in kidney (PubMed:10049739, PubMed:10462545, PubMed:10964714, PubMed:9887087, PubMed:9950961). Expressed at lower level in liver, skeletal muscle, brain and placenta (PubMed:10049739, PubMed:10462545, PubMed:9887087,

Sequence

MAFNDLLQQVGGVGRFQQIQVTLVVLPLLLMASHNTLQNFTAAIPTHHCRPPADANLSKN
GGLEVWLPRDRQGQPESCLRFTSPQWGLPFLNGTEANGTGATEPCTDGWIYDNSTFPSTI
VTEWDLVCSHRALRQLAQSLYMVGVLLGAMVFGYLADRLGRRKVLILNYLQTAVSGTCAA
FAPNFPIYCAFRLLSGMALAGISLNCMTLNVEWMPIHTRACVGTLIGYVYSLGQFLLAGV
AYAVPHWRHLQLLVSAPFFAFFIYSWFFIESARWHSSSGRLDLTLRALQRVARINGKREE
GAKLSMEVLRASLQKELTMGKGQASAMELLRCPTLRHLFLCLSMLWFATSFAYYGLVMDL
QGFGVSIYLIQVIFGAVDLPAKLVGFLVINSLGRRPAQMAALLLAGICILLNGVIPQDQS
IVRTSLAVLGKGCLAASFNCIFLYTGELYPTMIRQTGMGMGSTMARVGSIVSPLVSMTAE
LYPSMPLFIYGAVPVAASAVTVLLPETLGQPLPDTVQDLESRWAPTQKEAGIYPRKGKQT
RQQQEHQKYMVPLQASAQEKNGL

Sequence length

563

Interactions

View interactions

	KEGG		Reactome
	Folate transport and metabolism		Organic anion transport

Show/Hide Causal Diseases (1)

Disease term	Disease name	dbSNP ID	References
Causal
Tumoral calcinosis	Tumoral calcinosis	rs104894343, rs104894344, rs745655924, rs137853086, rs375879489, rs761396172, rs137853087, rs137853091, rs137853088, rs137853089, rs137853090, rs766750282, rs760830864, rs786205250, rs267606841 View all (4 more)	12803500

Show/Hide Unknown Diseases (1)

Disease term	Disease name	Evidence	References	Source
Unknown
Insomnia	Insomnia			GWAS

Show/Hide Text Mining Associations (10)

Disease Name	Relationship Type	References
Associations from Text Mining
Acute Kidney Injury	Associate	26277839
Carcinoma Renal Cell	Inhibit	32461965
Diabetic Nephropathies	Inhibit	23949796
Gout	Associate	35406626
Gyrate Atrophy	Associate	2893548
Inflammation	Associate	35245485
Juvenile gout	Associate	12472777
Renal Insufficiency Chronic	Associate	29795395
Stevens Johnson Syndrome	Associate	25876064
Vascular Diseases	Associate	35245485

SLC22A6 (solute carrier family 22 member 6)