Gene
Entrez ID Entrez Gene ID - the GENE ID in NCBI Gene database.
9060
Gene name Gene Name - the full gene name approved by the HGNC.
3'-phosphoadenosine 5'-phosphosulfate synthase 2
Gene symbol Gene Symbol - the official gene symbol approved by the HGNC.
PAPSS2
Synonyms (NCBI Gene) Gene synonyms aliases
ATPSK2, BCYM4, SK2
Disease Acronyms (UniProt) Disease acronyms from UniProt database
BCYM4
Chromosome Chromosome number
10
Chromosome location Chromosomal Location - indicates the cytogenetic location of the gene or region on the chromosome.
10q23.2-q23.31
Summary Summary of gene provided in NCBI Entrez Gene.
Sulfation is a common modification of endogenous (lipids, proteins, and carbohydrates) and exogenous (xenobiotics and drugs) compounds. In mammals, the sulfate source is 3`-phosphoadenosine 5`-phosphosulfate (PAPS), created from ATP and inorganic sulfate.
SNPs SNP information provided by dbSNP.
SNP ID Visualize variation Clinical significance Consequence
rs121908950 C>A Pathogenic Stop gained, coding sequence variant
rs121908951 C>G Pathogenic Missense variant, coding sequence variant
rs121908952 C>T Pathogenic Stop gained, coding sequence variant
rs138943074 G>A Pathogenic, uncertain-significance Missense variant, coding sequence variant
rs145242127 C>A,T Conflicting-interpretations-of-pathogenicity Synonymous variant, missense variant, coding sequence variant
miRNA miRNA information provided by mirtarbase database.
miRTarBase ID miRNA Experiments Reference
MIRT002636 hsa-miR-124-3p Microarray 18668037
MIRT002636 hsa-miR-124-3p Microarray 15685193
MIRT050720 hsa-miR-18a-5p CLASH 23622248
MIRT619439 hsa-miR-208a-5p HITS-CLIP 23824327
MIRT619438 hsa-miR-208b-5p HITS-CLIP 23824327
Transcription factors
Transcription factor Regulation Reference
SP2 Unknown 11931653
Gene ontology (GO) Gene ontology information of associated ontologies with gene provided by GO database.
GO ID Ontology Definition Evidence Reference
GO:0000103 Process Sulfate assimilation IBA 21873635
GO:0000103 Process Sulfate assimilation IEA
GO:0001501 Process Skeletal system development TAS 9771708
GO:0004020 Function Adenylylsulfate kinase activity IBA 21873635
GO:0004781 Function Sulfate adenylyltransferase (ATP) activity ISS
Other IDs Other ids provides unique ids of gene in databases such as OMIM, HGNC, ENSEMBLE.
MIM HGNC e!Ensembl
603005 8604 ENSG00000198682
Protein
UniProt ID O95340
Protein name Bifunctional 3'-phosphoadenosine 5'-phosphosulfate synthase 2 (PAPS synthase 2) (PAPSS 2) (Sulfurylase kinase 2) (SK 2) (SK2) [Includes: Sulfate adenylyltransferase (EC 2.7.7.4) (ATP-sulfurylase) (Sulfate adenylate transferase) (SAT); Adenylyl-sulfate kin
Protein function Bifunctional enzyme with both ATP sulfurylase and APS kinase activity, which mediates two steps in the sulfate activation pathway. The first step is the transfer of a sulfate group to ATP to yield adenosine 5'-phosphosulfate (APS), and the secon
PDB 2AX4 , 7FH3 , 7FHA , 8I1N , 8I1O
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF01583 APS_kinase 41 199 Domain
PF14306 PUA_2 215 376 PUA-like domain Domain
PF01747 ATP-sulfurylase 384 607 ATP-sulfurylase Domain
Tissue specificity TISSUE SPECIFICITY: Expressed in cartilage and adrenal gland. {ECO:0000269|PubMed:19474428}.
Sequence
Sequence length 614
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  KEGG   Reactome
  Purine metabolism
Selenocompound metabolism
Sulfur metabolism
Metabolic pathways
Sulfur cycle
  Transport and synthesis of PAPS
Defective PAPSS2 causes SEMD-PA
Associated diseases Disease information provided by ClinVar, GenCC, and GWAS databases.
Causal
Disease term Disease name dbSNP ID References
Brachydactyly Brachydactyly rs121908949, rs28937580, rs121909082, rs104894122, rs863223289, rs863223290, rs104894121, rs1587657302, rs863223292, rs74315386, rs74315387, rs28936397, rs753691079, rs121909348, rs121917852
View all (22 more)
Spondyloepimetaphyseal dysplasia Spondyloepimetaphyseal disorder rs121909497, rs121909499, rs879255602, rs878853267, rs779218846, rs878852980, rs878852981, rs1325869434, rs1565256477, rs1597675888, rs1597675890, rs1597676540, rs369033671
Spondyloepiphyseal dysplasia Spondyloepimetaphyseal Dysplasia, Pakistani Type, Spondyloepimetaphyseal dysplasia, PAPSS2 type rs72555367, rs121908950, rs121908951, rs121908952, rs104893637, rs104893639, rs387906534, rs121913568, rs606231241, rs606231242, rs786200933, rs606231243, rs786200934, rs397515546, rs797045099
View all (10 more)
23633440, 22791835, 23824674, 19474428, 25594860, 9771708, 9714015
Unknown
Disease term Disease name Evidence References Source
Brachyolmia autosomal recessive brachyolmia GenCC
Diabetes Diabetes GWAS
Associations from Text Mining
Disease Name Relationship Type References
3 Hydroxy 3 Methylglutaryl CoA Synthase 2 Deficiency Inhibit 19474428
Anovulation Associate 19474428, 25594860
Brachyolmia Associate 31313512, 36421772
Glioma Associate 30283018
Growth Disorders Associate 25594860, 31313512
Intellectual Disability Associate 15726110
Kashin Beck Disease Associate 24857976
Light Fixation Seizure Syndrome Associate 35261200
Metabolic Diseases Associate 29743239
Neoplasms Associate 33196683, 33225619