Gene
Entrez ID Entrez Gene ID - the GENE ID in NCBI Gene database.
8743
Gene name Gene Name - the full gene name approved by the HGNC.
TNF superfamily member 10
Gene symbol Gene Symbol - the official gene symbol approved by the HGNC.
TNFSF10
Synonyms (NCBI Gene) Gene synonyms aliases
APO2L, Apo-2L, CD253, TANCR, TL2, TNLG6A, TRAIL
Chromosome Chromosome number
3
Chromosome location Chromosomal Location - indicates the cytogenetic location of the gene or region on the chromosome.
3q26.31
Summary Summary of gene provided in NCBI Entrez Gene.
The protein encoded by this gene is a cytokine that belongs to the tumor necrosis factor (TNF) ligand family. This protein preferentially induces apoptosis in transformed and tumor cells, but does not appear to kill normal cells although it is expressed a
miRNA miRNA information provided by mirtarbase database.
miRTarBase ID miRNA Experiments Reference
MIRT003757 hsa-miR-221-3p Western blot 18246122
MIRT003756 hsa-miR-222-3p Western blot 18246122
MIRT027770 hsa-miR-98-5p Microarray 19088304
MIRT1443311 hsa-miR-3684 CLIP-seq
MIRT1443312 hsa-miR-4305 CLIP-seq
Transcription factors
Transcription factor Regulation Reference
EGR1 Repression 17932312
FOXO1 Activation 23630076
FOXO3 Activation 23630076
FOXO4 Activation 23630076
HDAC2 Repression 23630076
Gene ontology (GO) Gene ontology information of associated ontologies with gene provided by GO database.
GO ID Ontology Definition Evidence Reference
GO:0005102 Function Signaling receptor binding IEA
GO:0005102 Function Signaling receptor binding TAS 8663110, 8777713
GO:0005125 Function Cytokine activity IBA
GO:0005125 Function Cytokine activity IDA 21146232
GO:0005125 Function Cytokine activity IEA
Other IDs Other ids provides unique ids of gene in databases such as OMIM, HGNC, ENSEMBLE.
MIM HGNC e!Ensembl
603598 11925 ENSG00000121858
Protein
UniProt ID P50591
Protein name Tumor necrosis factor ligand superfamily member 10 (Apo-2 ligand) (Apo-2L) (TNF-related apoptosis-inducing ligand) (Protein TRAIL) (CD antigen CD253)
Protein function Cytokine that binds to TNFRSF10A/TRAILR1, TNFRSF10B/TRAILR2, TNFRSF10C/TRAILR3, TNFRSF10D/TRAILR4 and possibly also to TNFRSF11B/OPG (PubMed:10549288, PubMed:26457518). Induces apoptosis. Its activity may be modulated by binding to the decoy rec
PDB 1D0G , 1D2Q , 1D4V , 1DG6 , 1DU3 , 4N90 , 5CIR
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF00229 TNF 152 280 TNF(Tumour Necrosis Factor) family Domain
Tissue specificity TISSUE SPECIFICITY: Widespread; most predominant in spleen, lung and prostate.
Sequence
MAMMEVQGGPSLGQTCVLIVIFTVLLQSLCVAVTYVYFTNELKQMQDKYSKSGIACFLKE
DDSYWDPNDEESMNSPCWQVKWQLRQLVRKMILRTSEETISTVQEKQQNISPLVRERGPQ
RVAAHITGTRGRSNTLSSPNSKNEKALGRKINSWESSRSGHSFLSNLHLRNGELVIHEKG
FYYIYSQTYFRFQEEIKENTKNDKQMVQYIYKYTSYPDPILLMKSARNSCWSKDAEYGLY
SIYQGGIFELKENDRIFVSVTNEHLIDMDHEASFFGAFLV
G
Sequence length 281
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  KEGG   Reactome
  Cytokine-cytokine receptor interaction
Viral protein interaction with cytokine and cytokine receptor
FoxO signaling pathway
Apoptosis
Necroptosis
Natural killer cell mediated cytotoxicity
Pathogenic Escherichia coli infection
Salmonella infection
Influenza A
Lipid and atherosclerosis
  Caspase activation via Death Receptors in the presence of ligand
Regulation by c-FLIP
RIPK1-mediated regulated necrosis
CASP8 activity is inhibited
Dimerization of procaspase-8
TRAIL signaling
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Associated diseases Disease associations categorized as Causal (pathogenic variants), Unknown (uncertain genetic evidence), or Text Mining (literature-based associations)
Unknown Includes: (1) ClinVar NON-pathogenic variants (Uncertain, Benign, Conflicting, VUS), (2) GenCC associations, (3) GWAS associations, (4) CBGDA evidence-based associations. NOTE: Diseases with pathogenic evidence are excluded to avoid conflicts.
Disease merge term Disease name Evidence References Source
Breast cancer Breast cancer, Breast cancer (estrogen-receptor negative) N/A N/A GWAS
Breast Cancer Breast cancer subtype (triple negative vs luminal A-like) N/A N/A GWAS
Gout Gout N/A N/A GWAS
Prostate cancer Prostate cancer N/A N/A GWAS
Associations from Text Mining Disease associations identified through Pubtator
Disease Name Relationship Type References
Abortion Habitual Associate 23290504
Abortion Spontaneous Associate 23290504
Acne Vulgaris Associate 21564055
Acquired Immunodeficiency Syndrome Associate 15585654, 21483669
Acro Osteolysis Associate 12823344
Adenocarcinoma Associate 16580499, 21513580, 23479507, 24223304, 36550819
Adenocarcinoma of Lung Inhibit 26972480
Adenocarcinoma of Lung Associate 28756806
Albuminuria Associate 36591354
Alzheimer Disease Associate 18266928, 22420897, 22695614, 26745113, 29384188, 37012089