Gene
Entrez ID Entrez Gene ID - the GENE ID in NCBI Gene database.
8290
Gene name Gene Name - the full gene name approved by the HGNC.
H3.4 histone, cluster member
Gene symbol Gene Symbol - the official gene symbol approved by the HGNC.
H3-4
Synonyms (NCBI Gene) Gene synonyms aliases
H3.4, H3/g, H3C16, H3FT, H3t, HIST3H3
Chromosome Chromosome number
1
Chromosome location Chromosomal Location - indicates the cytogenetic location of the gene or region on the chromosome.
1q42.13
Summary Summary of gene provided in NCBI Entrez Gene.
Histones are basic nuclear proteins that are responsible for the nucleosome structure of the chromosomal fiber in eukaryotes. Nucleosomes consist of approximately 146 bp of DNA wrapped around a histone octamer composed of pairs of each of the four core hi
Gene ontology (GO) Gene ontology information of associated ontologies with gene provided by GO database.
GO ID Ontology Definition Evidence Reference
GO:0000781 Component Chromosome, telomeric region HDA 19135898
GO:0000786 Component Nucleosome IDA 20498094, 25615412
GO:0003677 Function DNA binding IEA
GO:0005515 Function Protein binding IPI 17537733, 17567753, 17599839, 20224553, 20498094, 21888893, 29340707, 30021884, 32296183
GO:0005634 Component Nucleus HDA 21630459
Other IDs Other ids provides unique ids of gene in databases such as OMIM, HGNC, ENSEMBLE.
MIM HGNC e!Ensembl
602820 4778 ENSG00000168148
Protein
UniProt ID Q16695
Protein name Histone H3.1t (H3/t) (H3t) (H3/g) (Histone H3.4)
Protein function Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair,
PDB 2V1D , 2YBP , 2YBS , 3A6N , 3T6R , 4V2V , 4V2W , 6OIE , 6WAT , 6WAU , 8VMI , 8Z50
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF00125 Histone 1 132 Core histone H2A/H2B/H3/H4 Domain
Tissue specificity TISSUE SPECIFICITY: Expressed in testicular cells.
Sequence
Sequence length 136
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  KEGG   Reactome
  Neutrophil extracellular trap formation
Alcoholism
Shigellosis
Transcriptional misregulation in cancer
Systemic lupus erythematosus
  Recognition and association of DNA glycosylase with site containing an affected purine
Cleavage of the damaged purine
Packaging Of Telomere Ends
Formation of the beta-catenin:TCF transactivating complex
Condensation of Prophase Chromosomes
DNA Damage/Telomere Stress Induced Senescence
Recruitment and ATM-mediated phosphorylation of repair and signaling proteins at DNA double strand breaks
Nonhomologous End-Joining (NHEJ)
Processing of DNA double-strand break ends
G2/M DNA damage checkpoint
Associated diseases Disease information provided by ClinVar, GenCC, and GWAS databases.
Causal
Disease term Disease name dbSNP ID References
Mental retardation Profound Mental Retardation, Mental deficiency, Intellectual Disability rs5742905, rs267607136, rs267607137, rs2131714307, rs267607038, rs267607042, rs80338685, rs137853127, rs80338815, rs28940893, rs387906309, rs121908096, rs121908099, rs587784365, rs121918315
View all (1024 more)
21937992
Unknown
Disease term Disease name Evidence References Source
Neurodevelopmental Disorders neurodevelopmental disorder GenCC