Gene Details | GeDiPNet - Complete Gene Info, Disease Associations & Pathways

Gene Gene information from NCBI Gene database. Gene miRNA Gene ontology Other IDs Protein Associated diseases
Entrez ID	81037
Gene name	CLPTM1 like
Gene symbol	CLPTM1L
Synonyms (NCBI Gene)	CRR9
Chromosome	5
Chromosome location	5p15.33
Summary	The protein encoded by this gene is a membrane protein whose overexpression in cisplatin-sensitive cells causes apoptosis. Polymorphisms in this gene have been reported to increase susceptibility to several cancers, including lung, pancreatic, and breast

Show/Hide all (56)

miRTarBase ID	miRNA	Experiments	Reference
MIRT050451	hsa-miR-22-3p	CLASH	23622248
MIRT723526	hsa-miR-4694-3p	HITS-CLIP	19536157
MIRT723527	hsa-miR-6856-3p	HITS-CLIP	19536157
MIRT723525	hsa-miR-3688-3p	HITS-CLIP	19536157
MIRT723524	hsa-miR-3622a-3p	HITS-CLIP	19536157
MIRT723523	hsa-miR-3622b-3p	HITS-CLIP	19536157
MIRT723522	hsa-miR-203a-3p	HITS-CLIP	19536157
MIRT723521	hsa-miR-5093	HITS-CLIP	19536157
MIRT723526	hsa-miR-4694-3p	HITS-CLIP	19536157
MIRT723527	hsa-miR-6856-3p	HITS-CLIP	19536157
MIRT723525	hsa-miR-3688-3p	HITS-CLIP	19536157
MIRT723524	hsa-miR-3622a-3p	HITS-CLIP	19536157
MIRT723523	hsa-miR-3622b-3p	HITS-CLIP	19536157
MIRT723522	hsa-miR-203a-3p	HITS-CLIP	19536157
MIRT723521	hsa-miR-5093	HITS-CLIP	19536157
MIRT897732	hsa-miR-1271	CLIP-seq
MIRT897733	hsa-miR-1290	CLIP-seq
MIRT897734	hsa-miR-182	CLIP-seq
MIRT897735	hsa-miR-4452	CLIP-seq
MIRT897736	hsa-miR-4671-5p	CLIP-seq
MIRT897737	hsa-miR-96	CLIP-seq
MIRT1966207	hsa-miR-105	CLIP-seq
MIRT897732	hsa-miR-1271	CLIP-seq
MIRT897733	hsa-miR-1290	CLIP-seq
MIRT897734	hsa-miR-182	CLIP-seq
MIRT1966208	hsa-miR-2115	CLIP-seq
MIRT1966209	hsa-miR-3689a-3p	CLIP-seq
MIRT1966210	hsa-miR-3689c	CLIP-seq
MIRT1966211	hsa-miR-377	CLIP-seq
MIRT1966212	hsa-miR-4251	CLIP-seq
MIRT1966213	hsa-miR-4267	CLIP-seq
MIRT1966214	hsa-miR-4329	CLIP-seq
MIRT1966215	hsa-miR-4447	CLIP-seq
MIRT1966216	hsa-miR-4472	CLIP-seq
MIRT1966217	hsa-miR-4488	CLIP-seq
MIRT897736	hsa-miR-4671-5p	CLIP-seq
MIRT1966218	hsa-miR-4677-3p	CLIP-seq
MIRT1966219	hsa-miR-4679	CLIP-seq
MIRT1966220	hsa-miR-4691-5p	CLIP-seq
MIRT1966221	hsa-miR-4697-5p	CLIP-seq
MIRT1966222	hsa-miR-516a-3p	CLIP-seq
MIRT1966223	hsa-miR-518e	CLIP-seq
MIRT1966224	hsa-miR-539	CLIP-seq
MIRT1966225	hsa-miR-634	CLIP-seq
MIRT1966226	hsa-miR-654-3p	CLIP-seq
MIRT897737	hsa-miR-96	CLIP-seq
MIRT1966207	hsa-miR-105	CLIP-seq
MIRT2202010	hsa-miR-1292	CLIP-seq
MIRT1966208	hsa-miR-2115	CLIP-seq
MIRT1966209	hsa-miR-3689a-3p	CLIP-seq
MIRT1966210	hsa-miR-3689c	CLIP-seq
MIRT2202011	hsa-miR-4471	CLIP-seq
MIRT1966220	hsa-miR-4691-5p	CLIP-seq
MIRT1966222	hsa-miR-516a-3p	CLIP-seq
MIRT1966224	hsa-miR-539	CLIP-seq
MIRT1966226	hsa-miR-654-3p	CLIP-seq

Show/Hide all (13)

GO ID	Ontology	Definition	Evidence	Reference
GO:0005515	Function	Protein binding	IPI	32296183
GO:0005783	Component	Endoplasmic reticulum	IDA
GO:0005783	Component	Endoplasmic reticulum	IEA
GO:0005789	Component	Endoplasmic reticulum membrane	IDA	35344438
GO:0005789	Component	Endoplasmic reticulum membrane	IEA
GO:0006869	Process	Lipid transport	IEA
GO:0006915	Process	Apoptotic process	IEA
GO:0012505	Component	Endomembrane system	IBA
GO:0016020	Component	Membrane	HDA	19946888
GO:0016020	Component	Membrane	IBA
GO:0016020	Component	Membrane	IEA
GO:0017121	Process	Plasma membrane phospholipid scrambling	IEA
GO:0017128	Function	Phospholipid scramblase activity	IDA	35344438

MIM	HGNC	e!Ensembl
612585	24308	ENSG00000049656

Q96KA5

Protein name

Lipid scramblase CLPTM1L (Cisplatin resistance-related protein 9) (CRR9p) (Cleft lip and palate transmembrane protein 1-like protein) (CLPTM1-like protein)

Protein function

Scramblase that mediates the translocation of glucosaminylphosphatidylinositol (alpha-D-GlcN-(1-6)-(1,2-diacyl-sn-glycero-3-phospho)-1D-myo-inositol, GlcN-PI) across the endoplasmic reticulum (ER) membrane, from the cytosolic leaflet to the lumi

Family and domains

Pfam

Accession	ID	Position in sequence	Description	Type
PF05602	CLPTM1	9 → 422	Cleft lip and palate transmembrane protein 1 (CLPTM1)	Family

Tissue specificity

TISSUE SPECIFICITY: Ubiquitously expressed. {ECO:0000269|PubMed:35344438}.

Sequence

MWSGRSSFTSLVVGVFVVYVVHTCWVMYGIVYTRPCSGDANCIQPYLARRPKLQLSVYTT
TRSHLGAENNIDLVLNVEDFDVESKFERTVNVSVPKKTRNNGTLYAYIFLHHAGVLPWHD
GKQVHLVSPLTTYMVPKPEEINLLTGESDTQQIEAEKKPTSALDEPVSHWRPRLALNVMA
DNFVFDGSSLPADVHRYMKMIQLGKTVHYLPILFIDQLSNRVKDLMVINRSTTELPLTVS
YDKVSLGRLRFWIHMQDAVYSLQQFGFSEKDADEVKGIFVDTNLYFLALTFFVAAFHLLF
DFLAFKNDISFWKKKKSMIGMSTKAVLWRCFSTVVIFLFLLDEQTSLLVLVPAGVGAAIE
LWKVKKALKMTIFWRGLMPEFQFGTYSESERKTEEYDTQAMKYLSYLLYPLCVGGAVYSL
LNIKYKSWYSWLINSFVNGVYAFGFLFMLPQLFVNYKLKSVAHLPWKAFTYKAFNTFIDD
VFAFIITMPTSHRLACFRDDVVFLVYLYQRWLYPVDKRRVNEFGESYEEKATRAPHTD

Sequence length

538

Interactions

View interactions

Show/Hide Unknown Diseases (6)

Phenotype Name	Clinical Significance	dbSNP ID	RCV Accession
Unknown Diseases with uncertain, conflicting, or no pathogenic evidence in ClinVar
Cervical cancer	Likely benign	rs142887696	RCV005933244
CLPTM1L-related disorder	Benign; Likely benign	rs150993328, rs781774544, rs115028409, rs199834712, rs751677876, rs762040634, rs1452932685, rs5865369, rs1429340504, rs144759255, rs367942927, rs142887696, rs142160762, rs372391081, rs34536907 View all (4 more)	RCV003909253 RCV003921481 RCV003929683 RCV003981542 RCV003983452 RCV003902233 RCV003899427 RCV003909578 RCV003911889 RCV003952169 RCV003927287 RCV003951465 RCV003934418 RCV003947170 RCV003944415 RCV003954741 RCV003971403 RCV003936793 RCV003944328
Familial cancer of breast	Likely benign	rs142887696	RCV005933243
Malignant tumor of esophagus	Benign	rs76174234	RCV005933415
Prostate cancer	Uncertain significance	rs193920801	RCV000149311
Uterine corpus endometrial carcinoma	Benign	rs76174234	RCV005933416

Show/Hide Text Mining Associations (54)

Disease Name	Relationship Type	References
Associations from Text MiningDisease associations identified through Pubtator
Adenocarcinoma	Associate	20700438, 23738012, 24386361, 27246533, 33393640
Adenocarcinoma of Lung	Associate	22370939, 23555636, 25233467, 28181565
Adenocarcinoma of Lung	Stimulate	22675468, 23300716
Basal Cell Nevus Syndrome	Associate	25159867
Breast Neoplasms	Associate	20056641, 22037553
Carcinogenesis	Associate	22412903, 22675468, 24386361, 25155038, 33213418, 38254939
Carcinoma Basal Cell	Associate	19578363, 25159867
Carcinoma Bronchogenic	Associate	21622582
Carcinoma Hepatocellular	Associate	25122662, 25339005
Carcinoma Non Small Cell Lung	Associate	22675468, 24039754, 24175795, 32943060, 33393640
Carcinoma Ovarian Epithelial	Associate	21949822
Carcinoma Squamous Cell	Associate	24386361
Carcinoma Squamous Cell	Inhibit	24386361
Cleft Lip	Associate	23395979
Cleft Palate	Associate	23395979
Colorectal Neoplasms	Associate	22351525, 22878375
Emphysema	Associate	21622582
Endometrial Neoplasms	Associate	25487306
Esophageal Neoplasms	Associate	25007268, 26304507
Esophageal Squamous Cell Carcinoma	Associate	25007268, 26716642
Gastrointestinal Neoplasms	Associate	26372813
Gastrointestinal Stromal Tumors	Associate	26372813
Intraocular Lymphoma	Associate	36459980
Leiomyosarcoma	Associate	22419440
Liver Cirrhosis Biliary	Associate	21622582
Lung Neoplasms	Associate	18978790, 19151717, 20056643, 20142248, 20548021, 20700438, 21622582, 21771723, 21966413, 22675468, 22945651, 23228068, 23300716, 23368278, 23433592 View all (12 more)
Lung Neoplasms	Stimulate	27062701
Melanoma	Associate	19578363, 21116649, 23393597, 24642353, 25789475, 25837821, 27993549, 31203567
Melanoma Cutaneous Malignant	Associate	19151717
Monosomy	Associate	34424336
Mouth Neoplasms	Associate	27749845
Nasopharyngeal Carcinoma	Associate	26621837, 31270100, 31289279
Nasopharyngeal Neoplasms	Associate	31270100
Neoplasms	Associate	19151717, 20101243, 20460502, 20543847, 20570912, 20802237, 21949822, 22878375, 22945651, 24386361, 25027329, 25122662, 25339005, 25487306, 26053551 View all (8 more)
Neoplasms	Stimulate	31009812
Neoplasms Germ Cell and Embryonal	Associate	21617256
Oropharyngeal Neoplasms	Inhibit	20802237
Oropharyngeal Neoplasms	Associate	20802237
Ovarian Neoplasms	Associate	22675468, 31009812
Pancreatic Neoplasms	Associate	20101243, 24022295, 24058443, 24577890, 24642353, 25940397, 27579533, 27797938, 28447668, 31203567, 31917448
Pancreatitis	Associate	28447668
Prostatic Neoplasms	Associate	22653581, 24651484, 26773531
Rectal Neoplasms	Associate	22351525
Skin Neoplasms	Associate	21116649
Small Cell Lung Carcinoma	Associate	25415319
Squamous Cell Carcinoma of Head and Neck	Associate	20802237, 28025427, 30635792, 32576588
Testicular Germ Cell Tumor	Associate	21617256
Thyroid Cancer Papillary	Associate	27185198
Tobacco Use Disorder	Associate	22945651, 25233467
Triple Negative Breast Neoplasms	Associate	22037553
Uniparental Disomy	Associate	34424336
Urinary Bladder Neoplasms	Associate	19151717, 21081471, 25347272, 33213418, 38254939
Uterine Cervical Neoplasms	Associate	33794208, 36929174
Uveal melanoma	Associate	34424336, 36459980

CLPTM1L (CLPTM1 like)