Gene
Entrez ID Entrez Gene ID - the GENE ID in NCBI Gene database.
80324
Gene name Gene Name - the full gene name approved by the HGNC.
Pseudouridine synthase 1
Gene symbol Gene Symbol - the official gene symbol approved by the HGNC.
PUS1
Synonyms (NCBI Gene) Gene synonyms aliases
MLASA1
Disease Acronyms (UniProt) Disease acronyms from UniProt database
MLASA1
Chromosome Chromosome number
12
Chromosome location Chromosomal Location - indicates the cytogenetic location of the gene or region on the chromosome.
12q24.33
Summary Summary of gene provided in NCBI Entrez Gene.
This gene encodes a pseudouridine synthase that converts uridine to pseudouridine once it has been incorporated into an RNA molecule. The encoded enzyme may play an essential role in tRNA function and in stabilizing the secondary and tertiary structure of
SNPs SNP information provided by dbSNP.
SNP ID Visualize variation Clinical significance Consequence
rs104894371 C>T Pathogenic Non coding transcript variant, coding sequence variant, missense variant
rs104894372 G>T Pathogenic Non coding transcript variant, coding sequence variant, stop gained, genic downstream transcript variant
rs149378338 C>A,T Conflicting-interpretations-of-pathogenicity Non coding transcript variant, genic downstream transcript variant, missense variant, coding sequence variant
rs372753711 G>A Likely-pathogenic Missense variant, genic downstream transcript variant, non coding transcript variant, coding sequence variant
rs779193823 C>G,T Pathogenic Synonymous variant, non coding transcript variant, stop gained, genic downstream transcript variant, coding sequence variant
miRNA miRNA information provided by mirtarbase database.
miRTarBase ID miRNA Experiments Reference
MIRT022192 hsa-miR-124-3p Microarray 18668037
MIRT027453 hsa-miR-98-5p Microarray 19088304
MIRT032213 hsa-let-7b-5p Proteomics 18668040
MIRT041439 hsa-miR-193b-3p CLASH 23622248
MIRT1277969 hsa-miR-1184 CLIP-seq
Gene ontology (GO) Gene ontology information of associated ontologies with gene provided by GO database.
GO ID Ontology Definition Evidence Reference
GO:0000049 Function TRNA binding IDA 23707380
GO:0002153 Function Steroid receptor RNA activator RNA binding IDA 24722331
GO:0003723 Function RNA binding HDA 22658674, 22681889
GO:0005634 Component Nucleus IBA 21873635
GO:0005654 Component Nucleoplasm IDA
Other IDs Other ids provides unique ids of gene in databases such as OMIM, HGNC, ENSEMBLE.
MIM HGNC e!Ensembl
608109 15508 ENSG00000177192
Protein
UniProt ID Q9Y606
Protein name Pseudouridylate synthase 1 homolog (EC 5.4.99.-) (tRNA pseudouridine synthase 1) (EC 5.4.99.12) (tRNA pseudouridine(38-40) synthase) (tRNA pseudouridylate synthase I) (tRNA-uridine isomerase I)
Protein function Pseudouridylate synthase that catalyzes pseudouridylation of tRNAs and mRNAs (PubMed:15772074, PubMed:24722331). Acts on positions 27/28 in the anticodon stem and also positions 34 and 36 in the anticodon of an intron containing tRNA (PubMed:247
PDB 4IQM , 4ITS , 4J37 , 4NZ6 , 4NZ7
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF01416 PseudoU_synth_1 235 341 tRNA pseudouridine synthase Domain
Tissue specificity TISSUE SPECIFICITY: Widely expressed (PubMed:15108122). High levels of expression found in brain and skeletal muscle (PubMed:15108122). {ECO:0000269|PubMed:15108122}.
Sequence
MGLQLRALLGAFGRWTLRLGPRPSCSPRMAGNAEPPPAGAACPQDRRSCSGRAGGDRVWE
DGEHPAKKLKSGGDEERREKPPKRKIVLLMAYSGKGYHGMQRNVGSSQFKTIEDDLVSAL
VRSGCIPENHGEDMRKMSFQRCARTDKGVSAAGQVVSLKVWLIDDILEKINSHLPSHIRI
LGLKRVTGGFNSKNRCDARTYCYLLPTFAFAHKDRDVQDETYRLSAETLQQVNRLLACYK
GTHNFHNFTSQKGPQDPSACRYILEMYCEEPFVREGLEFAVIRVKGQSFMMHQIRKMVGL
VVAIVKGYAPESVLERSWGTEKVDVPKAPGLGLVLERVHFE
KYNQRFGNDGLHEPLDWAQ
EEGKVAAFKEEHIYPTIIGTERDERSMAQWLSTLPIHNFSATALTAGGTGAKVPSPLEGS
EGDGDTD
Sequence length 427
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  Reactome
    tRNA modification in the mitochondrion
Associated diseases Disease information provided by ClinVar, GenCC, and GWAS databases.
Causal
Disease term Disease name dbSNP ID References
Anemia Anemia, Iron-Refractory Iron Deficiency Anemia rs118204044, rs118204045, rs118204046, rs121918330, rs869320719, rs869312029, rs121918332, rs869320724, rs767094129, rs786205058, rs786205059, rs137853119, rs137853120, rs137853121, rs1384933966
View all (89 more)
Breast cancer Malignant neoplasm of breast rs587776547, rs1137887, rs137853007, rs587776650, rs80359351, rs80359714, rs121917783, rs104886456, rs121964878, rs80359874, rs80357868, rs80357508, rs387906843, rs80357569, rs80358158
View all (309 more)
Gastric cancer Hereditary Diffuse Gastric Cancer rs137854571, rs63751108, rs34612342, rs121908383, rs121909144, rs121909775, rs121909219, rs121909223, rs63750871, rs80359530, rs121964873, rs121913530, rs606231203, rs121918505, rs587776802
View all (244 more)
21364753
Glaucoma Glaucoma rs121918355, rs1566660365, rs1566635134, rs121918356, rs1566634475, rs28936700, rs55771538, rs28936701, rs104893622, rs55989760, rs72549387, rs104893628, rs2125316417, rs104893629, rs74315328
View all (29 more)
Unknown
Disease term Disease name Evidence References Source
Sideroblastic Anemia myopathy, lactic acidosis, and sideroblastic anemia GenCC
Mitochondrial Diseases mitochondrial disease GenCC
Associations from Text Mining
Disease Name Relationship Type References
Mitochondrial Diseases Associate 15772074, 25227147
Myopathy with lactic acidosis and sideroblastic anemia Associate 15108122, 15772074, 20598274, 25037980
Osteoarthritis Associate 37006267