NUP214 (nucleoporin 214)

Gene

• Entrez ID: 8021
• Gene name: Nucleoporin 214
• Gene symbol: NUP214
• Synonyms (NCBI Gene): CAIN, CAN, IIAE9
• Chromosome: 9
• Chromosome location: 9q34.13
• Summary: The nuclear pore complex is a massive structure that extends across the nuclear envelope, forming a gateway that regulates the flow of macromolecules between the nucleus and the cytoplasm. Nucleoporins are the main components of the nuclear pore complex i

SNPs

SNP ID	Visualize variation	Clinical significance	Consequence
rs143595616	C>T	Likely-pathogenic, risk-factor	Missense variant, genic upstream transcript variant, coding sequence variant
rs563025075	C>G,T	Risk-factor	Missense variant, genic upstream transcript variant, coding sequence variant
rs1135402758	T>-	Likely-pathogenic	Intron variant
rs1210153519	C>-,CC	Risk-factor	Coding sequence variant, genic upstream transcript variant, frameshift variant
rs1564175808	A>G	Risk-factor	Genic upstream transcript variant, coding sequence variant, missense variant

miRNA

miRTarBase ID	miRNA	Experiments	Reference
MIRT032370	hsa-let-7b-5p	Proteomics	18668040
MIRT032370	hsa-let-7b-5p	CLASH	23622248
MIRT050542	hsa-miR-20a-5p	CLASH	23622248
MIRT050464	hsa-miR-22-3p	CLASH	23622248
MIRT046465	hsa-miR-15b-5p	CLASH	23622248
MIRT045641	hsa-miR-149-5p	CLASH	23622248
MIRT043751	hsa-miR-328-3p	CLASH	23622248
MIRT043374	hsa-miR-331-3p	CLASH	23622248
MIRT041295	hsa-miR-193b-3p	CLASH	23622248
MIRT041295	hsa-miR-193b-3p	CLASH	23622248
MIRT619455	hsa-miR-548c-3p	HITS-CLIP	23824327
MIRT619453	hsa-miR-216b-5p	HITS-CLIP	23824327
MIRT619452	hsa-miR-520f-5p	HITS-CLIP	23824327
MIRT619451	hsa-miR-6515-3p	HITS-CLIP	23824327
MIRT663320	hsa-miR-767-3p	HITS-CLIP	23824327
MIRT663319	hsa-miR-6847-3p	HITS-CLIP	23824327
MIRT619455	hsa-miR-548c-3p	HITS-CLIP	23824327
MIRT619453	hsa-miR-216b-5p	HITS-CLIP	23824327
MIRT619452	hsa-miR-520f-5p	HITS-CLIP	23824327
MIRT619451	hsa-miR-6515-3p	HITS-CLIP	23824327
MIRT646427	hsa-miR-1236-3p	HITS-CLIP	23824327
MIRT619455	hsa-miR-548c-3p	HITS-CLIP	23824327
MIRT619454	hsa-miR-618	HITS-CLIP	23824327
MIRT619453	hsa-miR-216b-5p	HITS-CLIP	23824327
MIRT619452	hsa-miR-520f-5p	HITS-CLIP	23824327
MIRT619451	hsa-miR-6515-3p	HITS-CLIP	23824327
MIRT440073	hsa-miR-218-5p	HITS-CLIP	23212916
MIRT440073	hsa-miR-218-5p	HITS-CLIP	23212916
MIRT619455	hsa-miR-548c-3p	HITS-CLIP	23824327
MIRT619453	hsa-miR-216b-5p	HITS-CLIP	23824327
MIRT619452	hsa-miR-520f-5p	HITS-CLIP	23824327
MIRT619451	hsa-miR-6515-3p	HITS-CLIP	23824327
MIRT663320	hsa-miR-767-3p	HITS-CLIP	23824327
MIRT663319	hsa-miR-6847-3p	HITS-CLIP	23824327
MIRT619455	hsa-miR-548c-3p	HITS-CLIP	23824327
MIRT619453	hsa-miR-216b-5p	HITS-CLIP	23824327
MIRT619452	hsa-miR-520f-5p	HITS-CLIP	23824327
MIRT619451	hsa-miR-6515-3p	HITS-CLIP	23824327
MIRT646427	hsa-miR-1236-3p	HITS-CLIP	23824327
MIRT619455	hsa-miR-548c-3p	HITS-CLIP	23824327
MIRT619454	hsa-miR-618	HITS-CLIP	23824327
MIRT619453	hsa-miR-216b-5p	HITS-CLIP	23824327
MIRT619452	hsa-miR-520f-5p	HITS-CLIP	23824327
MIRT619451	hsa-miR-6515-3p	HITS-CLIP	23824327
MIRT1199302	hsa-miR-3163	CLIP-seq
MIRT1199303	hsa-miR-4787-3p	CLIP-seq
MIRT2286122	hsa-miR-3689a-3p	CLIP-seq
MIRT2286123	hsa-miR-3689c	CLIP-seq
MIRT2286124	hsa-miR-4668-5p	CLIP-seq
MIRT2286125	hsa-miR-4728-5p	CLIP-seq
MIRT1199302	hsa-miR-3163	CLIP-seq
MIRT2286122	hsa-miR-3689a-3p	CLIP-seq
MIRT2286123	hsa-miR-3689c	CLIP-seq
MIRT2584024	hsa-miR-4261	CLIP-seq
MIRT2584025	hsa-miR-4494	CLIP-seq
MIRT2584026	hsa-miR-452	CLIP-seq
MIRT2286124	hsa-miR-4668-5p	CLIP-seq
MIRT2584027	hsa-miR-4676-3p	CLIP-seq
MIRT2584028	hsa-miR-4727-3p	CLIP-seq
MIRT2286125	hsa-miR-4728-5p	CLIP-seq
MIRT2584029	hsa-miR-633	CLIP-seq

Gene ontology (GO)

GO ID	Ontology	Definition	Evidence	Reference
GO:0005049	Function	Nuclear export signal receptor activity	IDA	10358091
GO:0005515	Function	Protein binding	IPI	11545741, 11777942, 14766228, 19208808, 19219046, 30021884, 30543681, 33961781, 35271311
GO:0005634	Component	Nucleus	IEA
GO:0005635	Component	Nuclear envelope	IDA	24315095
GO:0005635	Component	Nuclear envelope	IEA
GO:0005643	Component	Nuclear pore	IBA
GO:0005643	Component	Nuclear pore	IEA
GO:0005643	Component	Nuclear pore	NAS	24315095
GO:0005654	Component	Nucleoplasm	TAS
GO:0005829	Component	Cytosol	TAS
GO:0006405	Process	RNA export from nucleus	IBA
GO:0006406	Process	MRNA export from nucleus	IEA
GO:0006406	Process	MRNA export from nucleus	IEA
GO:0006406	Process	MRNA export from nucleus	IMP	10557333
GO:0006606	Process	Protein import into nucleus	IBA
GO:0006606	Process	Protein import into nucleus	IEA
GO:0006611	Process	Protein export from nucleus	IMP	12191473
GO:0006886	Process	Intracellular protein transport	IEA
GO:0006913	Process	Nucleocytoplasmic transport	NAS	27016207
GO:0008139	Function	Nuclear localization sequence binding	IBA
GO:0008139	Function	Nuclear localization sequence binding	IEA
GO:0015031	Process	Protein transport	IEA
GO:0017056	Function	Structural constituent of nuclear pore	IBA
GO:0017056	Function	Structural constituent of nuclear pore	IEA
GO:0046822	Process	Regulation of nucleocytoplasmic transport	IMP	11000203
GO:0051028	Process	MRNA transport	IEA
GO:0051726	Process	Regulation of cell cycle	IEA
GO:1990876	Component	Cytoplasmic side of nuclear pore	IDA	8108440

Other IDs

• MIM: 114350
• HGNC: 8064
• e!Ensembl: ENSG00000126883

Protein

• UniProt ID: P35658
• Protein name: Nuclear pore complex protein Nup214 (214 kDa nucleoporin) (Nucleoporin Nup214) (Protein CAN)
• Protein function: Part of the nuclear pore complex (PubMed:9049309). Has a critical role in nucleocytoplasmic transport (PubMed:31178128). May serve as a docking site in the receptor-mediated import of substrates across the nuclear pore complex (PubMed:31178128,
• PDB: 2OIT, 3FHC, 3FMO, 3FMP, 5DIS, 7R5J, 7R5K
• Family and domains:

  Pfam

  Accession	ID	Position in sequence	Description	Type
  PF18617	Nup214_FG	1915 → 1977	Nucleoporin Nup214 phenylalanine-glycine (FG) domain	Domain

• Tissue specificity: TISSUE SPECIFICITY: Expressed in thymus, spleen, bone marrow, kidney, brain and testis, but hardly in all other tissues or in whole embryos during development.
• Sequence:

  MGDEMDAMIPEREMKDFQFRALKKVRIFDSPEELPKERSSLLAVSNKYGLVFAGGASGLQ
  IFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMMSSEYGSII
  AFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVT
  ETVKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPTLQEKKVIPCPPFYESDHP
  VRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMALLPKKEEKHPEIFVNFMEPCYGSCTE
  RQHHYYLSYIEEWDLVLAASAASTEVSILARQSDQINWESWLLEDSSRAELPVTDKSDDS
  LPMGVVVDYTNQVEITISDEKTLPPAPVLMLLSTDGVLCPFYMINQNPGVKSLIKTPERL
  SLEGERQPKSPGSTPTTPTSSQAPQKLDASAAAAPASLPPSSPAAPIATFSLLPAGGAPT
  VFSFGSSSLKSSATVTGEPPSYSSGSDSSKAAPGPGPSTFSFVPPSKASLAPTPAASPVA
  PSAASFSFGSSGFKPTLESTPVPSVSAPNIAMKPSFPPSTSAVKVNLSEKFTAAATSTPV
  SSSQSAPPMSPFSSASKPAASGPLSHPTPLSAPPSSVPLKSSVLPSPSGRSAQGSSSPVP
  SMVQKSPRITPPAAKPGSPQAKSLQPAVAEKQGHQWKDSDPVMAGIGEEIAHFQKELEEL
  KARTSKACFQVGTSEEMKMLRTESDDLHTFLLEIKETTESLHGDISSLKTTLLEGFAGVE
  EAREQNERNRDSGYLHLLYKRPLDPKSEAQLQEIRRLHQYVKFAVQDVNDVLDLEWDQHL
  EQKKKQRHLLVPERETLFNTLANNREIINQQRKRLNHLVDSLQQLRLYKQTSLWSLSSAV
  PSQSSIHSFDSDLESLCNALLKTTIESHTKSLPKVPAKLSPMKQAQLRNFLAKRKTPPVR
  STAPASLSRSAFLSQRYYEDLDEVSSTSSVSQSLESEDARTSCKDDEAVVQAPRHAPVVR
  TPSIQPSLLPHAAPFAKSHLVHGSSPGVMGTSVATSASKIIPQGADSTMLATKTVKHGAP
  SPSHPISAPQAAAAAALRRQMASQAPAVNTLTESTLKNVPQVVNVQELKNNPATPSTAMG
  SSVPYSTAKTPHPVLTPVAANQAKQGSLINSLKPSGPTPASGQLSSGDKASGTAKIETAV
  TSTPSASGQFSKPFSFSPSGTGFNFGIITPTPSSNFTAAQGATPSTKESSQPDAFSSGGG
  SKPSYEAIPESSPPSGITSASNTTPGEPAASSSRPVAPSGTALSTTSSKLETPPSKLGEL
  LFPSSLAGETLGSFSGLRVGQADDSTKPTNKASSTSLTSTQPTKTSGVPSGFNFTAPPVL
  GKHTEPPVTSSATTTSVAPPAATSTSSTAVFGSLPVTSAGSSGVISFGGTSLSAGKTSFS
  FGSQQTNSTVPPSAPPPTTAATPLPTSFPTLSFGSLLSSATTPSLPMSAGRSTEEATSSA
  LPEKPGDSEVSASAASLLEEQQSAQLPQAPPQTSDSVKKEPVLAQPAVSNSGTAASSTSL
  VALSAEATPATTGVPDARTEAVPPASSFSVPGQTAVTAAAISSAGPVAVETSSTPIASST
  TSIVAPGPSAEAAAFGTVTSGSSVFAQPPAASSSSAFNQLTNNTATAPSATPVFGQVAAS
  TAPSLFGQQTGSTASTAAATPQVSSSGFSSPAFGTTAPGVFGQTTFGQASVFGQSASSAA
  SVFSFSQPGFSSVPAFGQPASSTPTSTSGSVFGAASSTSSSSSFSFGQSSPNTGGGLFGQ
  SNAPAFGQSPGFGQGGSVFGGTSAATTTAATSGFSFCQASGFGSSNTGSVFGQAASTGGI
  VFGQQSSSSSGSVFGSGNTGRGGGFFSGLGGKPSQDAANKNPFSSASGGFGSTATSNTSN
  LFGNSGAKTFGGFASSSFGEQKPTGTFSSGGGSVASQGFGFSSPNKTGGFGAAPVFGSPP
  TFGGSPGFGGVPAFGSAPAFTSPLGSTGGKVFGEGTAAASAGGFGFGSSSNTTSFGTLAS
  QNAPTFGSLSQQTSGFGTQSSGFSGFGSGTGGFSFGSNNSSVQGFGGWRS

• Sequence length: 2090

Pathways

KEGG:

Nucleocytoplasmic transport
Amyotrophic lateral sclerosis

Reactome:

ISG15 antiviral mechanism
Transport of the SLBP independent Mature mRNA
Transport of the SLBP Dependant Mature mRNA
Transport of Mature mRNA Derived from an Intronless Transcript
Transport of Mature mRNA derived from an Intron-Containing Transcript
Rev-mediated nuclear export of HIV RNA
Transport of Ribonucleoproteins into the Host Nucleus
NS1 Mediated Effects on Host Pathways
Viral Messenger RNA Synthesis
NEP/NS2 Interacts with the Cellular Export Machinery
Regulation of Glucokinase by Glucokinase Regulatory Protein
Vpr-mediated nuclear import of PICs
snRNP Assembly
SUMOylation of DNA damage response and repair proteins
SUMOylation of ubiquitinylation proteins
Nuclear Pore Complex (NPC) Disassembly
Regulation of HSF1-mediated heat shock response
SUMOylation of SUMOylation proteins
HuR (ELAVL1) binds and stabilizes mRNA
SUMOylation of chromatin organization proteins
SUMOylation of RNA binding proteins
SUMOylation of DNA replication proteins
Transcriptional regulation by small RNAs
Defective TPR may confer susceptibility towards thyroid papillary carcinoma (TPC)
tRNA processing in the nucleus
HCMV Early Events
HCMV Late Events

Associated diseases

Causal
Phenotype Name	Clinical Significance	dbSNP ID	RCV Accession
Congenital anomaly of face	Likely pathogenic	rs1135402758	RCV000497237
Developmental delay	Likely pathogenic	rs1135402758	RCV000497237
Encephalopathy, acute, infection-induced, susceptibility to, 9	Likely pathogenic; Pathogenic	rs2538417680, rs143595616, rs563025075, rs1210153519	RCV003225673 RCV000785780 RCV000785781 RCV000785782
Growth delay	Likely pathogenic	rs1135402758	RCV000497237
NUP214-related disorder	Likely pathogenic	rs143224806	RCV003231006
Progressive microcephaly	Likely pathogenic; Pathogenic	rs143595616	RCV000714270
Recurrent encephalopathy	Likely pathogenic; Pathogenic	rs143595616	RCV000714270

Unknown
Phenotype Name	Clinical Significance	dbSNP ID	RCV Accession
Acute myeloid leukemia	Uncertain significance; Likely benign	rs1302128286, rs777090971	RCV001806436 RCV005929027
Cervical cancer	Benign	rs61756081, rs28594669	RCV005908602 RCV005905895
Clear cell carcinoma of kidney	Benign	rs61756081	RCV005908603
Colon adenocarcinoma	Benign	rs61756081	RCV005908601
Developmental disorder	Uncertain significance	rs2538603603	RCV003127313
Lung cancer	Benign	rs61756081, rs28594669	RCV005908607 RCV005905896
Neonatal encephalopathy	Uncertain significance	rs149894427	RCV003154301
Ovarian serous cystadenocarcinoma	Benign	rs61756081	RCV005908605
Sarcoma	Benign	rs61756081	RCV005908604
Thyroid cancer, nonmedullary, 1	Uncertain significance; Benign	rs141655844, rs61756081	RCV005928958 RCV005908606
Uterine corpus endometrial carcinoma	Benign	rs61756081	RCV005908608

Associations from Text Mining
Disease Name	Relationship Type	References
Acute Febrile Encephalopathy	Associate	31178128
Amyotrophic Lateral Sclerosis	Associate	35355568
Breast Neoplasms	Associate	27506935
Carcinogenesis	Associate	27114368
Cell Transformation Viral	Associate	36288392
Cerebellar Diseases	Associate	31178128
Death	Associate	18835836
Developmental Disabilities	Associate	29483668
Hematologic Neoplasms	Associate	37833906
HIV Infections	Associate	23049930
Intellectual Disability	Associate	29483668
Leukemia	Associate	1549122, 24073922, 27114368, 27317766, 27613868, 32664447, 33327316, 34320268
Leukemia Biphenotypic Acute	Associate	20417863, 27317766
Leukemia Myeloid	Associate	24441146
Leukemia Myeloid Acute	Associate	1549122, 19166587, 2370860, 24441146, 28318095, 30809988, 31755865, 32664447, 33327316, 33558656, 35941390, 36288392, 37833906, 39361146
Lymphoma T Cell Peripheral	Associate	37833906
Microcephaly	Associate	31178128
Myelodysplastic Syndromes	Associate	24441146, 28318095, 33558656
Neoplasms	Associate	25743594, 31221207, 33558656, 37833906
Neural Tube Defects	Associate	24441146
Niemann Pick Disease Type C	Associate	22558357
Osteitis Deformans	Associate	35355568
Precursor Cell Lymphoblastic Leukemia Lymphoma	Associate	27161658, 27821800, 30936193, 35641210, 36172171
Precursor T Cell Lymphoblastic Leukemia Lymphoma	Associate	15361874, 15713800, 16873673, 17233820, 18299449, 18322257, 18835836, 19166587, 20494936, 21880637, 23872305, 29279377, 34320268, 35650277, 36172171
Respiratory Distress Syndrome	Associate	34556700
X Linked Combined Immunodeficiency Diseases	Associate	1549122, 24441146, 28318095, 32020596, 33558656, 35941390, 36288392