Gene
Entrez ID Entrez Gene ID - the GENE ID in NCBI Gene database.
79641
Gene name Gene Name - the full gene name approved by the HGNC.
Rogdi atypical leucine zipper
Gene symbol Gene Symbol - the official gene symbol approved by the HGNC.
ROGDI
Synonyms (NCBI Gene) Gene synonyms aliases
KTZS, RAV2, ROGD1
Disease Acronyms (UniProt) Disease acronyms from UniProt database
KTZS
Chromosome Chromosome number
16
Chromosome location Chromosomal Location - indicates the cytogenetic location of the gene or region on the chromosome.
16p13.3
Summary Summary of gene provided in NCBI Entrez Gene.
This gene encodes a protein of unknown function. Loss-of-function mutation in this gene cause Kohlschutter-Tonz syndrome. Alternate splicing results in multiple transcript variants. [provided by RefSeq, Mar 2012]
SNPs SNP information provided by dbSNP.
SNP ID Visualize variation Clinical significance Consequence
rs138409264 C>T Conflicting-interpretations-of-pathogenicity, benign-likely-benign Non coding transcript variant, coding sequence variant, missense variant
rs150687774 G>A Conflicting-interpretations-of-pathogenicity, benign-likely-benign Coding sequence variant, non coding transcript variant, synonymous variant
rs372097881 G>A Pathogenic Non coding transcript variant, stop gained, coding sequence variant
rs387907145 G>A Pathogenic Non coding transcript variant, coding sequence variant, stop gained
rs387907146 G>A Pathogenic Non coding transcript variant, coding sequence variant, stop gained
miRNA miRNA information provided by mirtarbase database.
miRTarBase ID miRNA Experiments Reference
MIRT029066 hsa-miR-26b-5p Microarray 19088304
MIRT051133 hsa-miR-16-5p CLASH 23622248
MIRT439749 hsa-miR-127-5p HITS-CLIP 24374217
MIRT439749 hsa-miR-127-5p HITS-CLIP 24374217
MIRT1315099 hsa-miR-3141 CLIP-seq
Gene ontology (GO) Gene ontology information of associated ontologies with gene provided by GO database.
GO ID Ontology Definition Evidence Reference
GO:0005515 Function Protein binding IPI 17043677, 31413325, 32296183
GO:0005635 Component Nuclear envelope IDA 22482807
GO:0007420 Process Brain development IMP 25565929
GO:0008021 Component Synaptic vesicle IEA
GO:0008284 Process Positive regulation of cell population proliferation IEA
Other IDs Other ids provides unique ids of gene in databases such as OMIM, HGNC, ENSEMBLE.
MIM HGNC e!Ensembl
614574 29478 ENSG00000067836
Protein
UniProt ID Q9GZN7
Protein name Protein rogdi homolog
PDB 5XQH , 5XQI
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF10259 Rogdi_lz 18 276 Rogdi leucine zipper containing protein Family
Tissue specificity TISSUE SPECIFICITY: Widely expressed with highest levels in spinal cord, brain, heart and bone marrow. Also expressed in fetal brain and liver. {ECO:0000269|PubMed:22482807}.
Sequence
Sequence length 287
Interactions View interactions
Associated diseases Disease information provided by ClinVar, GenCC, and GWAS databases.
Causal
Disease term Disease name dbSNP ID References
Amelocerebrohypohidrotic syndrome Amelocerebrohypohidrotic syndrome rs764899074, rs387907145, rs749657986, rs786205119, rs387907146, rs786205124, rs772340154, rs1060502981, rs1555491350, rs372097881, rs1039568775, rs570952151, rs1596277148, rs754417953
Amelogenesis imperfecta Amelogenesis Imperfecta rs267607178, rs143816093, rs606231351, rs137854435, rs137854440, rs137854441, rs137854444, rs587776587, rs121908109, rs587776588, rs140213840, rs104894704, rs387906487, rs387906488, rs387906489
View all (70 more)
Autism spectrum disorder Autism Spectrum Disorders rs724159978, rs75184679, rs119103221, rs9332964, rs121912562, rs1594344233, rs727504317, rs111033204, rs1801086, rs587784464, rs724159948, rs764659822, rs794727977, rs796052733, rs796052728
View all (51 more)
31209396
Developmental delay Global developmental delay rs28941770, rs199469464, rs281865469, rs143747297, rs398123009, rs587777428, rs786205133, rs606231459, rs797044854, rs797045027, rs864309504, rs878853160, rs886039902, rs886042046, rs886041291
View all (32 more)
Associations from Text Mining
Disease Name Relationship Type References
Kohlschutter Tonz syndrome Associate 22424600, 23086778, 28638151