Gene
Entrez ID Entrez Gene ID - the GENE ID in NCBI Gene database.
7518
Gene name Gene Name - the full gene name approved by the HGNC.
X-ray repair cross complementing 4
Gene symbol Gene Symbol - the official gene symbol approved by the HGNC.
XRCC4
Synonyms (NCBI Gene) Gene synonyms aliases
SSMED, hXRCC4
Disease Acronyms (UniProt) Disease acronyms from UniProt database
SSMED
Chromosome Chromosome number
5
Chromosome location Chromosomal Location - indicates the cytogenetic location of the gene or region on the chromosome.
5q14.2
Summary Summary of gene provided in NCBI Entrez Gene.
The protein encoded by this gene functions together with DNA ligase IV and the DNA-dependent protein kinase in the repair of DNA double-strand breaks. This protein plays a role in both non-homologous end joining and the completion of V(D)J recombination.
SNPs SNP information provided by dbSNP.
SNP ID Visualize variation Clinical significance Consequence
rs587779351 T>C Pathogenic Coding sequence variant, missense variant
rs768825050 C>T Pathogenic Coding sequence variant, stop gained
rs779773463 C>T Pathogenic Coding sequence variant, stop gained
rs797045016 C>T Pathogenic Coding sequence variant, genic downstream transcript variant, stop gained
rs797045017 G>A,T Pathogenic Coding sequence variant, missense variant
miRNA miRNA information provided by mirtarbase database.
miRTarBase ID miRNA Experiments Reference
MIRT1497385 hsa-miR-3121-5p CLIP-seq
MIRT1497386 hsa-miR-3657 CLIP-seq
MIRT1497387 hsa-miR-4517 CLIP-seq
MIRT1497388 hsa-miR-4669 CLIP-seq
MIRT2441710 hsa-miR-203 CLIP-seq
Gene ontology (GO) Gene ontology information of associated ontologies with gene provided by GO database.
GO ID Ontology Definition Evidence Reference
GO:0000793 Component Condensed chromosome IDA 12589063
GO:0003677 Function DNA binding IDA 9259561
GO:0005515 Function Protein binding IPI 9809069, 11702069, 15380105, 16275660, 16439205, 16713569, 17124166, 17353262, 17389648, 17396150, 18064046, 21349273, 21637298, 21768349, 22529269, 23178593, 23219551, 24095731, 25416956, 25910212, 26496610, 28514442, 29997244, 31515488, 31548606, 32296183
GO:0005634 Component Nucleus IDA 9259561, 12589063
GO:0005634 Component Nucleus NAS 16439205
Other IDs Other ids provides unique ids of gene in databases such as OMIM, HGNC, ENSEMBLE.
MIM HGNC e!Ensembl
194363 12831 ENSG00000152422
Protein
UniProt ID Q13426
Protein name DNA repair protein XRCC4 (hXRCC4) (X-ray repair cross-complementing protein 4) [Cleaved into: Protein XRCC4, C-terminus (XRCC4/C)]
Protein function [DNA repair protein XRCC4]: DNA non-homologous end joining (NHEJ) core factor, required for double-strand break repair and V(D)J recombination (PubMed:10757784, PubMed:10854421, PubMed:12517771, PubMed:16412978, PubMed:17124166, PubMed:17290226,
PDB 1FU1 , 1IK9 , 3II6 , 3MUD , 3Q4F , 3RWR , 3SR2 , 3W03 , 4XA4 , 5CHX , 5CJ0 , 5CJ4 , 5E50 , 5WJ7 , 5WLZ , 6ABO , 7LSY , 7LT3 , 7M3P , 7NFC , 7NFE , 8BH3 , 8BHV , 8BHY , 8BOT , 8EZA , 8EZB
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF06632 XRCC4 1 334 DNA double-strand break repair and V(D)J recombination protein XRCC4 Family
Tissue specificity TISSUE SPECIFICITY: Widely expressed. {ECO:0000269|PubMed:8548796}.
Sequence
Sequence length 336
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  KEGG   Reactome
  Non-homologous end-joining   2-LTR circle formation
SUMOylation of DNA damage response and repair proteins
Nonhomologous End-Joining (NHEJ)
Associated diseases Disease information provided by ClinVar, GenCC, and GWAS databases.
Causal
Disease term Disease name dbSNP ID References
Anemia Anemia rs118204044, rs118204045, rs118204046, rs121918330, rs869320719, rs869312029, rs121918332, rs869320724, rs767094129, rs786205058, rs786205059, rs137853119, rs137853120, rs137853121, rs1384933966
View all (89 more)
Apraxia Apraxias rs121908377, rs121908378, rs1135401820, rs1178491246, rs1584969672
Colorectal neoplasms Hereditary Nonpolyposis Colorectal Neoplasms rs28929483, rs63751108, rs28929484, rs63749831, rs63750047, rs63751207, rs63749811, rs1553350126, rs63750875, rs63750955, rs587776706, rs63750871, rs587776715, rs63751466, rs63750049
View all (1682 more)
25058500
Colorectal cancer Hereditary Nonpolyposis Colorectal Cancer, Hereditary Non-Polyposis Colon Cancer Type 2, Colorectal cancer, hereditary nonpolyposis, type 1 rs137854568, rs137854573, rs137854575, rs387906234, rs121908380, rs121908702, rs267606674, rs794729661, rs121909055, rs281865417, rs267606884, rs28934575, rs587776769, rs104893815, rs587776800
View all (467 more)
25058500
Unknown
Disease term Disease name Evidence References Source
Acanthosis nigricans Acanthosis Nigricans ClinVar
Renal hypoplasia Congenital hypoplasia of kidney ClinVar
Colorectal Cancer hereditary nonpolyposis colon cancer In summary, our data strongly demonstrated that upregulation of GRB7 conferred MEKi resistance in CRC cells with KRAS mutations by mediating RTK signaling through the recruitment of PLK1. GenCC, CBGDA
Microcephalic Primordial Dwarfism-Insulin Resistance Syndrome microcephalic primordial dwarfism-insulin resistance syndrome GenCC
Associations from Text Mining
Disease Name Relationship Type References
Adenocarcinoma of Lung Associate 34486486
Autosomal Recessive Primary Microcephaly Associate 25839420
Brain Neoplasms Associate 27613841
Breast Neoplasms Associate 16091150, 18383855, 20496165, 24062231, 25360583, 25501155, 27571987, 31030479, 33017027
Breast Neoplasms Stimulate 33184404
Carcinogenesis Associate 18383855, 18630527, 19443403, 19729825, 24378850, 30429230
Carcinoma Adenoid Cystic Associate 26035306
Carcinoma Hepatocellular Stimulate 25337275
Carcinoma Hepatocellular Associate 25337275, 32258128, 36524359
Carcinoma Non Small Cell Lung Associate 19408343, 23924833