Gene Gene information from NCBI Gene database.
Entrez ID 7490
Gene name WT1 transcription factor
Gene symbol WT1
Synonyms (NCBI Gene)
AWT1GUDNPHS4WAGRWIT-2WT-1WT33
Chromosome 11
Chromosome location 11p13
Summary This gene encodes a transcription factor that contains four zinc-finger motifs at the C-terminus and a proline/glutamine-rich DNA-binding domain at the N-terminus. It has an essential role in the normal development of the urogenital system, and it is muta
SNPs SNP information provided by dbSNP.
40
SNP ID Visualize variation Clinical significance Consequence
rs28941777 A>G Pathogenic Coding sequence variant, missense variant, non coding transcript variant
rs28941778 C>A,T Pathogenic, likely-pathogenic Coding sequence variant, missense variant, non coding transcript variant
rs28941779 A>G,T Pathogenic Coding sequence variant, missense variant, non coding transcript variant
rs28942089 G>A Pathogenic Coding sequence variant, missense variant, non coding transcript variant
rs121907900 G>A Likely-pathogenic, pathogenic Coding sequence variant, non coding transcript variant, missense variant
miRNA miRNA information provided by mirtarbase database.
118
miRTarBase ID miRNA Experiments Reference
MIRT000817 hsa-miR-15a-5p qRT-PCRproteomics analysis 18362358
MIRT000816 hsa-miR-16-5p qRT-PCRproteomics analysis 18362358
MIRT003966 hsa-miR-212-3p Microarray 17875710
MIRT610238 hsa-miR-8485 HITS-CLIP 19536157
MIRT610238 hsa-miR-8485 HITS-CLIP 19536157
Transcription factors Transcription factors information provided by TRRUST V2 database.
17
Transcription factor Regulation Reference
CTCF Unknown 24534946
EP300 Activation 15752709;18064385
ETS1 Activation 18064385
GATA1 Activation 19212333
GATA1 Unknown 10360378
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
90
GO ID Ontology Definition Evidence Reference
GO:0000122 Process Negative regulation of transcription by RNA polymerase II IDA 7585606
GO:0000122 Process Negative regulation of transcription by RNA polymerase II IEA
GO:0000122 Process Negative regulation of transcription by RNA polymerase II IMP 23042785
GO:0000976 Function Transcription cis-regulatory region binding IDA 1332065, 7585606, 7588596, 9815658, 16467207
GO:0000978 Function RNA polymerase II cis-regulatory region sequence-specific DNA binding IBA
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
607102 12796 ENSG00000184937
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
P19544
Protein name Wilms tumor protein (WT33)
Protein function Transcription factor that plays an important role in cellular development and cell survival (PubMed:7862533). Recognizes and binds to the DNA sequence 5'-GCG(T/G)GGGCG-3' (PubMed:17716689, PubMed:25258363, PubMed:7862533). Regulates the expressi
PDB 1XF7 , 2JP9 , 2JPA , 2PRT , 3HPJ , 3MYJ , 4R2E , 4R2P , 4R2Q , 4R2R , 4R2S , 4WUU , 5KL2 , 5KL3 , 5KL4 , 5KL5 , 5KL6 , 5KL7 , 6B0O , 6B0P , 6B0Q , 6B0R , 6BLW , 6RSY , 6WLH , 7BBG , 8ISN
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF02165 WT1 1 321 Family
PF00096 zf-C2H2 353 377 Zinc finger, C2H2 type Domain
PF00096 zf-C2H2 383 405 Zinc finger, C2H2 type Domain
Tissue specificity TISSUE SPECIFICITY: Expressed in the kidney and a subset of hematopoietic cells.
Sequence
Sequence length 449
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  KEGG 
  Transcriptional misregulation in cancer  
Associated diseases Disease associations from ClinVar categorized as Causal (Pathogenic/Likely Pathogenic) or Unknown.
6076
Causal Diseases associated with Pathogenic or Likely Pathogenic variants in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession
11p partial monosomy syndrome Pathogenic; Likely pathogenic rs2132942367, rs2133073037, rs2133103216, rs2133072022, rs2133105444, rs2133104877, rs2132939500, rs2132942163, rs2133032244, rs1852674417, rs121907900, rs121907901, rs121907902, rs587776576, rs121907909
View all (41 more)
RCV001381915
RCV001390720
RCV001389217
RCV002022736
RCV001941604
RCV001972489
RCV001956051
RCV001881191
RCV002043484
RCV001983497
RCV000467701
RCV001851622
RCV001376854
RCV000705142
RCV000471023
RCV002512715
RCV002512716
RCV000685465
RCV005222665
RCV001216104
RCV005222666
RCV003062358
RCV002876400
RCV002885213
RCV002899411
RCV003022908
RCV003025851
RCV003048353
RCV005227950
RCV005216112
RCV003783568
RCV003783571
RCV003783572
RCV003790865
RCV003808611
RCV003808651
RCV003807126
RCV003804606
RCV003815416
RCV003813279
RCV003810442
RCV001381624
RCV003766670
RCV001377140
RCV000653779
RCV000557914
RCV000541858
RCV000525079
RCV000653783
RCV000653788
RCV000692823
RCV000822133
RCV000799020
RCV001213839
RCV001218361
RCV001231379
RCV001879755
Drash syndrome Pathogenic; Likely pathogenic rs2132942367, rs2133073037, rs2133103216, rs2133072022, rs2133105444, rs2133104877, rs2132939500, rs2132942163, rs2133032244, rs1852674417, rs121907900, rs121907901, rs121907902, rs28941778, rs121907903
View all (49 more)
RCV001381915
RCV001390720
RCV001389217
RCV002022736
RCV001941604
RCV001972489
RCV001956051
RCV001881191
RCV002043484
RCV001983497
RCV000003656
RCV000003659
RCV000003660
RCV000003661
RCV000003663
RCV000003664
RCV000003665
RCV000471023
RCV000003667
RCV000003669
RCV000003670
RCV000003672
RCV001216104
RCV005222666
RCV003062358
RCV002876400
RCV002885213
RCV002899411
RCV003022908
RCV003025851
RCV003048353
RCV005227950
RCV005216112
RCV003447756
RCV003985900
RCV003783568
RCV003783571
RCV003783572
RCV003790865
RCV003808611
RCV003808651
RCV003807126
RCV003804606
RCV003815416
RCV003813279
RCV003810442
RCV000469904
RCV003225075
RCV001377140
RCV000653779
RCV000557914
RCV000541858
RCV000525079
RCV000653783
RCV000653788
RCV000659253
RCV000692823
RCV000988519
RCV000761347
RCV000822133
RCV000799020
RCV000988514
RCV000995915
RCV001213839
RCV001218361
RCV001231379
RCV001280531
Familial idiopathic steroid-resistant nephrotic syndrome Pathogenic; Likely pathogenic rs587776576, rs587776577, rs869025561 RCV000208283
RCV000157584
RCV000208133
Focal segmental glomerulosclerosis Pathogenic rs121907909 RCV002293974
Unknown Diseases with uncertain, conflicting, or no pathogenic evidence in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession
Acute myeloid leukemia Benign; Conflicting classifications of pathogenicity rs5030278, rs1037084691 RCV005915406
RCV000766274
Ambiguous genitalia Conflicting classifications of pathogenicity rs1851829640 RCV001260907
Atypical hemolytic-uremic syndrome Benign; Likely benign rs5030274 RCV002294089
Cholestasis Uncertain significance rs2132920232 RCV002244239
Associations from Text MiningDisease associations identified through Pubtator
Disease Name Relationship Type References
46 XX Disorders of Sex Development Associate 30294972
46 XX Testicular Disorders of Sex Development Associate 30294972
Adenocarcinoma Associate 11570906, 23706170, 7856747
Adenocarcinoma Mucinous Associate 18469795
Adenocarcinoma of Lung Associate 16547468, 33540574, 35011587
Adenoma Associate 12841869, 12890744, 26248896
Adenoma Pleomorphic Associate 21057459, 21063414
Adenomatoid Tumor Associate 19543245
Albuminuria Associate 34246281, 34608521
Alzheimer Disease Associate 24005853, 25391383