Gene
Entrez ID Entrez Gene ID - the GENE ID in NCBI Gene database.
7431
Gene name Gene Name - the full gene name approved by the HGNC.
Vimentin
Gene symbol Gene Symbol - the official gene symbol approved by the HGNC.
VIM
Synonyms (NCBI Gene) Gene synonyms aliases
-
Chromosome Chromosome number
10
Chromosome location Chromosomal Location - indicates the cytogenetic location of the gene or region on the chromosome.
10p13
Summary Summary of gene provided in NCBI Entrez Gene.
This gene encodes a type III intermediate filament protein. Intermediate filaments, along with microtubules and actin microfilaments, make up the cytoskeleton. The encoded protein is responsible for maintaining cell shape and integrity of the cytoplasm, a
SNPs SNP information provided by dbSNP.
SNP ID Visualize variation Clinical significance Consequence
rs1588736025 T>C Likely-pathogenic Coding sequence variant, missense variant
miRNA miRNA information provided by mirtarbase database.
miRTarBase ID miRNA Experiments Reference
MIRT004724 hsa-miR-124-3p Luciferase reporter assay, qRT-PCR, Western blot 19843643
MIRT004724 hsa-miR-124-3p Luciferase reporter assay, qRT-PCR, Western blot 19843643
MIRT004724 hsa-miR-124-3p Luciferase reporter assay, qRT-PCR, Western blot 19843643
MIRT004724 hsa-miR-124-3p Luciferase reporter assay, qRT-PCR, Western blot 19843643
MIRT005028 hsa-miR-17-3p qRT-PCR, Western blot 19771525
Transcription factors
Transcription factor Regulation Reference
AR Repression 18535113
CTNNB1 Activation 12750294
ERG Activation 8895512
ETV4 Activation 8895512
HDGF Activation 22247069
Gene ontology (GO) Gene ontology information of associated ontologies with gene provided by GO database.
GO ID Ontology Definition Evidence Reference
GO:0003723 Function RNA binding IEA
GO:0003725 Function Double-stranded RNA binding IDA 21266579
GO:0005200 Function Structural constituent of cytoskeleton IBA
GO:0005200 Function Structural constituent of cytoskeleton IDA 11889032
GO:0005200 Function Structural constituent of cytoskeleton IEA
Other IDs Other ids provides unique ids of gene in databases such as OMIM, HGNC, ENSEMBLE.
MIM HGNC e!Ensembl
193060 12692 ENSG00000026025
Protein
UniProt ID P08670
Protein name Vimentin
Protein function Vimentins are class-III intermediate filaments found in various non-epithelial cells, especially mesenchymal cells. Vimentin is attached to the nucleus, endoplasmic reticulum, and mitochondria, either laterally or terminally. Plays a role in cel
PDB 1GK4 , 1GK6 , 1GK7 , 3G1E , 3KLT , 3S4R , 3SSU , 3SWK , 3TRT , 3UF1 , 4MCY , 4MCZ , 4MD0 , 4MD5 , 4MDI , 4MDJ , 4YPC , 4YV3 , 5WHF , 6ATF , 6ATI , 6BIR , 6YXK , 8RVE , 8TRQ , 8TRR
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF04732 Filament_head 6 101 Intermediate filament head (DNA binding) region Family
PF00038 Filament 102 410 Intermediate filament protein Coiled-coil
Tissue specificity TISSUE SPECIFICITY: Highly expressed in fibroblasts, some expression in T- and B-lymphocytes, and little or no expression in Burkitt's lymphoma cell lines. Expressed in many hormone-independent mammary carcinoma cell lines. {ECO:0000269|PubMed:2472876, EC
Sequence
Sequence length 466
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  KEGG   Reactome
  Cytoskeleton in muscle cells
Epstein-Barr virus infection
MicroRNAs in cancer
  Caspase-mediated cleavage of cytoskeletal proteins
Striated Muscle Contraction
Interleukin-4 and Interleukin-13 signaling
Aggrephagy
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Associated diseases Disease associations categorized as Causal (pathogenic variants), Unknown (uncertain genetic evidence), or Text Mining (literature-based associations)
Causal Diseases caused by PATHOGENIC or LIKELY PATHOGENIC variants from ClinVar only
Disease merge term Disease name dbSNP ID References
Cataract cataract 30, Developmental cataract rs121917775, rs864309690 N/A
Unknown Includes: (1) ClinVar NON-pathogenic variants (Uncertain, Benign, Conflicting, VUS), (2) GenCC associations, (3) GWAS associations, (4) CBGDA evidence-based associations. NOTE: Diseases with pathogenic evidence are excluded to avoid conflicts.
Disease merge term Disease name Evidence References Source
Pulverulent Cataract pulverulent cataract N/A N/A GenCC
Associations from Text Mining Disease associations identified through Pubtator
Disease Name Relationship Type References
Acute Kidney Injury Associate 24946133, 39954965
Adenocarcinoma Associate 18212748, 22315367, 23264213, 26910219, 29179690, 29851704, 32727513, 34706517
Adenocarcinoma Mucinous Associate 2173410, 30258209
Adenocarcinoma of Lung Stimulate 25189096
Adenocarcinoma of Lung Associate 31042721, 31043817, 31103348, 33825780, 34118147, 37424170, 38095634
Adenoma Associate 27896617
Adenoma Oxyphilic Associate 17683191, 25944973, 30116406
Adenoma Oxyphilic Stimulate 18081436
Adrenal Cortex Neoplasms Associate 10734233
Adrenal Gland Neoplasms Associate 1693469