Gene
Entrez ID Entrez Gene ID - the GENE ID in NCBI Gene database.
6878
Gene name Gene Name - the full gene name approved by the HGNC.
TATA-box binding protein associated factor 6
Gene symbol Gene Symbol - the official gene symbol approved by the HGNC.
TAF6
Synonyms (NCBI Gene) Gene synonyms aliases
ALYUS, MGC:8964, TAF(II)70, TAF(II)80, TAF2E, TAFII-70, TAFII-80, TAFII70, TAFII80, TAFII85
Disease Acronyms (UniProt) Disease acronyms from UniProt database
ALYUS
Chromosome Chromosome number
7
Chromosome location Chromosomal Location - indicates the cytogenetic location of the gene or region on the chromosome.
7q22.1
Summary Summary of gene provided in NCBI Entrez Gene.
Initiation of transcription by RNA polymerase II requires the activities of more than 70 polypeptides. The protein that coordinates these activities is transcription factor IID (TFIID), which binds to the core promoter to position the polymerase properly,
SNPs SNP information provided by dbSNP.
SNP ID Visualize variation Clinical significance Consequence
rs374993554 A>G,T Likely-pathogenic, pathogenic Non coding transcript variant, missense variant, coding sequence variant
rs727503778 G>A Pathogenic Coding sequence variant, intron variant, non coding transcript variant, missense variant
rs1131691405 C>T Likely-pathogenic Splice donor variant
rs1554387469 C>T Likely-pathogenic Splice acceptor variant
miRNA miRNA information provided by mirtarbase database.
miRTarBase ID miRNA Experiments Reference
MIRT028133 hsa-miR-93-5p Sequencing 20371350
MIRT040207 hsa-miR-615-3p CLASH 23622248
MIRT550110 hsa-miR-3609 PAR-CLIP 21572407
MIRT550109 hsa-miR-548ah-5p PAR-CLIP 21572407
MIRT550108 hsa-miR-8060 PAR-CLIP 21572407
Gene ontology (GO) Gene ontology information of associated ontologies with gene provided by GO database.
GO ID Ontology Definition Evidence Reference
GO:0000124 Component SAGA complex IEA
GO:0003677 Function DNA binding IDA 15601843
GO:0003713 Function Transcription coactivator activity IBA 21873635
GO:0005515 Function Protein binding IPI 9045704, 15328371, 15601843, 15899866, 21994455
GO:0005654 Component Nucleoplasm IDA
Other IDs Other ids provides unique ids of gene in databases such as OMIM, HGNC, ENSEMBLE.
MIM HGNC e!Ensembl
602955 11540 ENSG00000106290
Protein
UniProt ID P49848
Protein name Transcription initiation factor TFIID subunit 6 (RNA polymerase II TBP-associated factor subunit E) (Transcription initiation factor TFIID 70 kDa subunit) (TAF(II)70) (TAFII-70) (TAFII70) (Transcription initiation factor TFIID 80 kDa subunit) (TAF(II)80)
Protein function The TFIID basal transcription factor complex plays a major role in the initiation of RNA polymerase II (Pol II)-dependent transcription (PubMed:33795473). TFIID recognizes and binds promoters with or without a TATA box via its subunit TBP, a TAT
PDB 5FUR , 6F3T , 6MZC , 6MZD , 6MZL , 6MZM , 7EDX , 7EG7 , 7EG8 , 7EG9 , 7EGA , 7EGB , 7EGC , 7EGD , 7EGE , 7EGF , 7EGG , 7EGH , 7EGI , 7EGJ , 7ENA , 7ENC , 8GXQ , 8GXS , 8WAK , 8WAL , 8WAN , 8WAO , 8WAP , 8WAQ , 8WAR , 8WAS
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF02969 TAF 11 76 TATA box binding protein associated factor (TAF) Domain
PF07571 TAF6_C 308 397 TAF6 C-terminal HEAT repeat domain Family
Sequence
MAEEKKLKLSNTVLPSESMKVVAESMGIAQIQEETCQLLTDEVSYRIKEIAQDALKFMHM
GKRQKLTTSDIDYALK
LKNVEPLYGFHAQEFIPFRFASGGGRELYFYEEKEVDLSDIINT
PLPRVPLDVCLKAHWLSIEGCQPAIPENPPPAPKEQQKAEATEPLKSAKPGQEEDGPLKG
KGQGATTADGKGKEKKAPPLLEGAPLRLKPRSIHELSVEQQLYYKEITEACVGSCEAKRA
EALQSIATDPGLYQMLPRFSTFISEGVRVNVVQNNLALLIYLMRMVKALMDNPTLYLEKY
VHELIPAVMTCIVSRQLCLRPDVDNHWALRDFAARLVAQICKHFSTTTNNIQSRITKTFT
KSWVDEKTPWTTRYGSIAGLAELGHDVIKTLILPRLQ
QEGERIRSVLDGPVLSNIDRIGA
DHVQSLLLKHCAPVLAKLRPPPDNQDAYRAEFGSLGPLLCSQVVKARAQAALQAQQVNRT
TLTITQPRPTLTLSQAPQPGPRTPGLLKVPGSIALPVQTLVSARAAAPPQPSPPPTKFIV
MSSSSSAPSTQQVLSLSTSAPGSGSTTTSPVTTTVPSVQPIVKLVSTATTAPPSTAPSGP
GSVQKYIVVSLPPTGEGKGGPTSHPSPVPPPASSPSPLSGSALCGGKQEAGDSPPPAPGT
PKANGSQPNSGSPQPAP
Sequence length 677
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  KEGG   Reactome
  Basal transcription factors   RNA Polymerase II Pre-transcription Events
Regulation of TP53 Activity through Phosphorylation
RNA polymerase II transcribes snRNA genes
RNA Polymerase II Promoter Escape
RNA Polymerase II Transcription Pre-Initiation And Promoter Opening
RNA Polymerase II Transcription Initiation
RNA Polymerase II Transcription Initiation And Promoter Clearance
Associated diseases Disease information provided by ClinVar, GenCC, and GWAS databases.
Causal
Disease term Disease name dbSNP ID References
Alazami-yuan syndrome ALAZAMI-YUAN SYNDROME rs374993554, rs727503778 25558065, 25574841
Cornelia de lange syndrome Cornelia de Lange Syndrome 1 rs121918264, rs121918265, rs1554011042, rs1561222491, rs1554016981, rs121918266, rs121918267, rs121918268, rs1561231553, rs121918269, rs724159980, rs863223279, rs387907212, rs398122888, rs397515415
View all (340 more)
Cryptorchidism Cryptorchidism rs121912555, rs104894697, rs104894698, rs398122886
Developmental delay Global developmental delay rs28941770, rs199469464, rs281865469, rs143747297, rs398123009, rs587777428, rs786205133, rs606231459, rs797044854, rs797045027, rs864309504, rs878853160, rs886039902, rs886042046, rs886041291
View all (32 more)
Unknown
Disease term Disease name Evidence References Source
Alazami-Yuan Syndrome Alazami-Yuan syndrome GenCC
Associations from Text Mining
Disease Name Relationship Type References
Congenital Abnormalities Associate 36849876
De Lange Syndrome Associate 25574841
Developmental Disabilities Associate 36849876
Genetic Diseases Inborn Associate 25574841
Neoplasms Associate 18628956