Gene Details | GeDiPNet - Complete Gene Info, Disease Associations & Pathways

Gene Gene information from NCBI Gene database. Gene SNPs miRNA Gene ontology Other IDs Protein Pathways Associated diseases
Entrez ID	6872
Gene name	TATA-box binding protein associated factor 1
Gene symbol	TAF1
Synonyms (NCBI Gene)	BA2RCCG1CCGSDYT3DYT3/TAF1KAT4MRXS33N-TAF1NSCL2OFP250TAF(II)250TAF2ATAFII-250TAFII250XDP
Chromosome	X
Chromosome location	Xq13.1
Summary	Initiation of transcription by RNA polymerase II requires the activities of more than 70 polypeptides. The protein that coordinates these activities is the basal transcription factor TFIID, which binds to the core promoter to position the polymerase prope

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SNP ID	Visualize variation	Clinical significance	Consequence
rs144106353	T>C	Conflicting-interpretations-of-pathogenicity	5 prime UTR variant, genic upstream transcript variant, coding sequence variant, non coding transcript variant, synonymous variant
rs148448660	G>A	Conflicting-interpretations-of-pathogenicity	5 prime UTR variant, missense variant, genic upstream transcript variant, non coding transcript variant, coding sequence variant
rs397509359	C>A,T	Pathogenic	Non coding transcript variant, genic downstream transcript variant
rs767354861	C>T	Likely-pathogenic	Coding sequence variant, genic upstream transcript variant, non coding transcript variant, missense variant
rs864321627	T>C	Pathogenic	Genic upstream transcript variant, genic downstream transcript variant, non coding transcript variant, missense variant, coding sequence variant
rs864321628	T>C	Pathogenic	Missense variant, non coding transcript variant, coding sequence variant, genic upstream transcript variant
rs864321629	C>T	Pathogenic	Genic upstream transcript variant, genic downstream transcript variant, non coding transcript variant, missense variant, coding sequence variant
rs864321630	C>T	Likely-pathogenic, pathogenic	Missense variant, non coding transcript variant, coding sequence variant, genic upstream transcript variant
rs864321631	G>C	Pathogenic	Missense variant, non coding transcript variant, coding sequence variant, genic upstream transcript variant
rs1057518019	C>T	Likely-pathogenic	Missense variant, genic upstream transcript variant, coding sequence variant, non coding transcript variant
rs1064793874	A>G	Likely-pathogenic	Missense variant, genic downstream transcript variant, genic upstream transcript variant, coding sequence variant, non coding transcript variant
rs1131691982	G>A	Likely-pathogenic	Missense variant, genic downstream transcript variant, genic upstream transcript variant, coding sequence variant, non coding transcript variant
rs1555980523	C>T	Likely-pathogenic	Non coding transcript variant, genic upstream transcript variant, missense variant, genic downstream transcript variant, coding sequence variant
rs1555980614	T>C	Likely-pathogenic	Non coding transcript variant, genic upstream transcript variant, missense variant, genic downstream transcript variant, coding sequence variant
rs1569301036	C>T	Pathogenic	Genic downstream transcript variant, coding sequence variant, genic upstream transcript variant, non coding transcript variant, missense variant
rs1602481623	A>G	Likely-pathogenic	Coding sequence variant, genic upstream transcript variant, non coding transcript variant, missense variant
rs1602489684	G>A	Likely-pathogenic	Coding sequence variant, genic upstream transcript variant, non coding transcript variant, missense variant
rs1602506017	C>T	Likely-pathogenic	Coding sequence variant, genic upstream transcript variant, non coding transcript variant, missense variant
rs1602520317	C>T	Likely-pathogenic	Coding sequence variant, non coding transcript variant, genic upstream transcript variant, 3 prime UTR variant, missense variant
rs1602538353	C>T	Likely-pathogenic	Genic downstream transcript variant, coding sequence variant, genic upstream transcript variant, non coding transcript variant, missense variant
rs1602572645	A>G,T	Likely-pathogenic, uncertain-significance	Genic downstream transcript variant, coding sequence variant, genic upstream transcript variant, non coding transcript variant, missense variant
rs1602624914	A>C	Likely-pathogenic	Genic downstream transcript variant, coding sequence variant, genic upstream transcript variant, non coding transcript variant, missense variant
rs1602624950	C>T	Likely-pathogenic	Genic downstream transcript variant, coding sequence variant, genic upstream transcript variant, non coding transcript variant, missense variant

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miRTarBase ID	miRNA	Experiments	Reference
MIRT018059	hsa-miR-335-5p	Microarray	18185580
MIRT025847	hsa-miR-7-5p	Microarray	17612493
MIRT030916	hsa-miR-21-5p	Microarray	18591254
MIRT673006	hsa-miR-4486	HITS-CLIP	23824327
MIRT673004	hsa-miR-24-3p	HITS-CLIP	23824327
MIRT676841	hsa-miR-3652	HITS-CLIP	23824327
MIRT676840	hsa-miR-4430	HITS-CLIP	23824327
MIRT676839	hsa-miR-4505	HITS-CLIP	23824327
MIRT676838	hsa-miR-5787	HITS-CLIP	23824327
MIRT673003	hsa-miR-3178	HITS-CLIP	23824327
MIRT676837	hsa-miR-647	HITS-CLIP	23824327
MIRT676836	hsa-miR-6842-3p	HITS-CLIP	23824327
MIRT673001	hsa-miR-4508	HITS-CLIP	23824327
MIRT673007	hsa-miR-383-3p	HITS-CLIP	23824327
MIRT673006	hsa-miR-4486	HITS-CLIP	23824327
MIRT673005	hsa-miR-4284	HITS-CLIP	23824327
MIRT673004	hsa-miR-24-3p	HITS-CLIP	23824327
MIRT673003	hsa-miR-3178	HITS-CLIP	23824327
MIRT673002	hsa-miR-7977	HITS-CLIP	23824327
MIRT673001	hsa-miR-4508	HITS-CLIP	23824327
MIRT673006	hsa-miR-4486	HITS-CLIP	23824327
MIRT673004	hsa-miR-24-3p	HITS-CLIP	23824327
MIRT676841	hsa-miR-3652	HITS-CLIP	23824327
MIRT676840	hsa-miR-4430	HITS-CLIP	23824327
MIRT676839	hsa-miR-4505	HITS-CLIP	23824327
MIRT676838	hsa-miR-5787	HITS-CLIP	23824327
MIRT673003	hsa-miR-3178	HITS-CLIP	23824327
MIRT676837	hsa-miR-647	HITS-CLIP	23824327
MIRT676836	hsa-miR-6842-3p	HITS-CLIP	23824327
MIRT673001	hsa-miR-4508	HITS-CLIP	23824327
MIRT673007	hsa-miR-383-3p	HITS-CLIP	23824327
MIRT673006	hsa-miR-4486	HITS-CLIP	23824327
MIRT673005	hsa-miR-4284	HITS-CLIP	23824327
MIRT673004	hsa-miR-24-3p	HITS-CLIP	23824327
MIRT673003	hsa-miR-3178	HITS-CLIP	23824327
MIRT673002	hsa-miR-7977	HITS-CLIP	23824327
MIRT673001	hsa-miR-4508	HITS-CLIP	23824327
MIRT1409002	hsa-miR-101	CLIP-seq
MIRT1409003	hsa-miR-1200	CLIP-seq
MIRT1409004	hsa-miR-122	CLIP-seq
MIRT1409005	hsa-miR-1224-3p	CLIP-seq
MIRT1409006	hsa-miR-1260	CLIP-seq
MIRT1409007	hsa-miR-1260b	CLIP-seq
MIRT1409008	hsa-miR-1272	CLIP-seq
MIRT1409009	hsa-miR-128	CLIP-seq
MIRT1409010	hsa-miR-1280	CLIP-seq
MIRT1409011	hsa-miR-1298	CLIP-seq
MIRT1409012	hsa-miR-1322	CLIP-seq
MIRT1409013	hsa-miR-1324	CLIP-seq
MIRT1409014	hsa-miR-1343	CLIP-seq
MIRT1409015	hsa-miR-151-3p	CLIP-seq
MIRT1409016	hsa-miR-21	CLIP-seq
MIRT1409017	hsa-miR-25	CLIP-seq
MIRT1409018	hsa-miR-27a	CLIP-seq
MIRT1409019	hsa-miR-27b	CLIP-seq
MIRT1409020	hsa-miR-302f	CLIP-seq
MIRT1409021	hsa-miR-3074-5p	CLIP-seq
MIRT1409022	hsa-miR-31	CLIP-seq
MIRT1409023	hsa-miR-3121-5p	CLIP-seq
MIRT1409024	hsa-miR-3124-3p	CLIP-seq
MIRT1409025	hsa-miR-3126-3p	CLIP-seq
MIRT1409026	hsa-miR-3128	CLIP-seq
MIRT1409027	hsa-miR-3135b	CLIP-seq
MIRT1409028	hsa-miR-3150a-3p	CLIP-seq
MIRT1409029	hsa-miR-3157-3p	CLIP-seq
MIRT1409030	hsa-miR-3175	CLIP-seq
MIRT1409031	hsa-miR-3189-5p	CLIP-seq
MIRT1409032	hsa-miR-32	CLIP-seq
MIRT1409033	hsa-miR-320e	CLIP-seq
MIRT1409034	hsa-miR-331-3p	CLIP-seq
MIRT1409035	hsa-miR-338-3p	CLIP-seq
MIRT1409036	hsa-miR-338-5p	CLIP-seq
MIRT1409037	hsa-miR-342-3p	CLIP-seq
MIRT1409038	hsa-miR-3611	CLIP-seq
MIRT1409039	hsa-miR-362-5p	CLIP-seq
MIRT1409040	hsa-miR-363	CLIP-seq
MIRT1409041	hsa-miR-3663-5p	CLIP-seq
MIRT1409042	hsa-miR-367	CLIP-seq
MIRT1409043	hsa-miR-3679-3p	CLIP-seq
MIRT1409044	hsa-miR-3682-3p	CLIP-seq
MIRT1409045	hsa-miR-3685	CLIP-seq
MIRT1409046	hsa-miR-384	CLIP-seq
MIRT1409047	hsa-miR-3914	CLIP-seq
MIRT1409048	hsa-miR-3920	CLIP-seq
MIRT1409049	hsa-miR-3941	CLIP-seq
MIRT1409050	hsa-miR-3942-3p	CLIP-seq
MIRT1409051	hsa-miR-4256	CLIP-seq
MIRT1409052	hsa-miR-4263	CLIP-seq
MIRT1409053	hsa-miR-4266	CLIP-seq
MIRT1409054	hsa-miR-4289	CLIP-seq
MIRT1409055	hsa-miR-4292	CLIP-seq
MIRT1409056	hsa-miR-4305	CLIP-seq
MIRT1409057	hsa-miR-4317	CLIP-seq
MIRT1409058	hsa-miR-4318	CLIP-seq
MIRT1409059	hsa-miR-4325	CLIP-seq
MIRT1409060	hsa-miR-4463	CLIP-seq
MIRT1409061	hsa-miR-4476	CLIP-seq
MIRT1409062	hsa-miR-4477a	CLIP-seq
MIRT1409063	hsa-miR-4494	CLIP-seq
MIRT1409064	hsa-miR-4499	CLIP-seq
MIRT1409065	hsa-miR-4659a-3p	CLIP-seq
MIRT1409066	hsa-miR-4659b-3p	CLIP-seq
MIRT1409067	hsa-miR-466	CLIP-seq
MIRT1409068	hsa-miR-4661-5p	CLIP-seq
MIRT1409069	hsa-miR-4666-5p	CLIP-seq
MIRT1409070	hsa-miR-4667-5p	CLIP-seq
MIRT1409071	hsa-miR-4672	CLIP-seq
MIRT1409072	hsa-miR-4699-5p	CLIP-seq
MIRT1409073	hsa-miR-4700-5p	CLIP-seq
MIRT1409074	hsa-miR-4720-5p	CLIP-seq
MIRT1409075	hsa-miR-4724-3p	CLIP-seq
MIRT1409076	hsa-miR-4727-5p	CLIP-seq
MIRT1409077	hsa-miR-4728-5p	CLIP-seq
MIRT1409078	hsa-miR-4733-5p	CLIP-seq
MIRT1409079	hsa-miR-4758-3p	CLIP-seq
MIRT1409080	hsa-miR-4769-3p	CLIP-seq
MIRT1409081	hsa-miR-4777-3p	CLIP-seq
MIRT1409082	hsa-miR-4777-5p	CLIP-seq
MIRT1409083	hsa-miR-4799-3p	CLIP-seq
MIRT1409084	hsa-miR-4799-5p	CLIP-seq
MIRT1409085	hsa-miR-483-3p	CLIP-seq
MIRT1409086	hsa-miR-499a-5p	CLIP-seq
MIRT1409087	hsa-miR-500b	CLIP-seq
MIRT1409088	hsa-miR-501-5p	CLIP-seq
MIRT1409089	hsa-miR-518d-5p	CLIP-seq
MIRT1409090	hsa-miR-519b-5p	CLIP-seq
MIRT1409091	hsa-miR-519c-5p	CLIP-seq
MIRT1409092	hsa-miR-520c-5p	CLIP-seq
MIRT1409093	hsa-miR-526a	CLIP-seq
MIRT1409094	hsa-miR-548c-3p	CLIP-seq
MIRT1409095	hsa-miR-576-5p	CLIP-seq
MIRT1409096	hsa-miR-587	CLIP-seq
MIRT1409097	hsa-miR-590-5p	CLIP-seq
MIRT1409098	hsa-miR-603	CLIP-seq
MIRT1409099	hsa-miR-637	CLIP-seq
MIRT1409100	hsa-miR-663b	CLIP-seq
MIRT1409101	hsa-miR-664	CLIP-seq
MIRT1409102	hsa-miR-7	CLIP-seq
MIRT1409103	hsa-miR-874	CLIP-seq
MIRT1409104	hsa-miR-92a	CLIP-seq
MIRT1409105	hsa-miR-92b	CLIP-seq
MIRT1409106	hsa-miR-939	CLIP-seq
MIRT1409003	hsa-miR-1200	CLIP-seq
MIRT1409107	hsa-miR-125a-3p	CLIP-seq
MIRT1409108	hsa-miR-1913	CLIP-seq
MIRT1409021	hsa-miR-3074-5p	CLIP-seq
MIRT1409024	hsa-miR-3124-3p	CLIP-seq
MIRT1409033	hsa-miR-320e	CLIP-seq
MIRT1409109	hsa-miR-324-3p	CLIP-seq
MIRT1409110	hsa-miR-361-3p	CLIP-seq
MIRT1409041	hsa-miR-3663-5p	CLIP-seq
MIRT1409111	hsa-miR-3670	CLIP-seq
MIRT1409112	hsa-miR-3934	CLIP-seq
MIRT1409051	hsa-miR-4256	CLIP-seq
MIRT1409061	hsa-miR-4476	CLIP-seq
MIRT1409113	hsa-miR-4707-3p	CLIP-seq
MIRT1409114	hsa-miR-4710	CLIP-seq
MIRT1409081	hsa-miR-4777-3p	CLIP-seq
MIRT1409115	hsa-miR-4792	CLIP-seq
MIRT1409094	hsa-miR-548c-3p	CLIP-seq
MIRT1409102	hsa-miR-7	CLIP-seq
MIRT1409116	hsa-miR-764	CLIP-seq
MIRT1409117	hsa-miR-9	CLIP-seq
MIRT2122700	hsa-miR-1183	CLIP-seq
MIRT2122701	hsa-miR-3143	CLIP-seq
MIRT2122702	hsa-miR-383	CLIP-seq
MIRT1409067	hsa-miR-466	CLIP-seq
MIRT2122703	hsa-miR-4722-3p	CLIP-seq
MIRT1409094	hsa-miR-548c-3p	CLIP-seq
MIRT1409002	hsa-miR-101	CLIP-seq
MIRT2122700	hsa-miR-1183	CLIP-seq
MIRT2345070	hsa-miR-1228	CLIP-seq
MIRT1409008	hsa-miR-1272	CLIP-seq
MIRT1409009	hsa-miR-128	CLIP-seq
MIRT1409011	hsa-miR-1298	CLIP-seq
MIRT1409012	hsa-miR-1322	CLIP-seq
MIRT1409014	hsa-miR-1343	CLIP-seq
MIRT2345071	hsa-miR-153	CLIP-seq
MIRT2345072	hsa-miR-1976	CLIP-seq
MIRT2345073	hsa-miR-2110	CLIP-seq
MIRT2345074	hsa-miR-2681	CLIP-seq
MIRT1409018	hsa-miR-27a	CLIP-seq
MIRT1409019	hsa-miR-27b	CLIP-seq
MIRT1409023	hsa-miR-3121-5p	CLIP-seq
MIRT1409025	hsa-miR-3126-3p	CLIP-seq
MIRT2122701	hsa-miR-3143	CLIP-seq
MIRT1409028	hsa-miR-3150a-3p	CLIP-seq
MIRT2345075	hsa-miR-3153	CLIP-seq
MIRT1409037	hsa-miR-342-3p	CLIP-seq
MIRT1409039	hsa-miR-362-5p	CLIP-seq
MIRT1409043	hsa-miR-3679-3p	CLIP-seq
MIRT1409044	hsa-miR-3682-3p	CLIP-seq
MIRT2345076	hsa-miR-3690	CLIP-seq
MIRT2122702	hsa-miR-383	CLIP-seq
MIRT1409050	hsa-miR-3942-3p	CLIP-seq
MIRT2345077	hsa-miR-410	CLIP-seq
MIRT1409051	hsa-miR-4256	CLIP-seq
MIRT2345078	hsa-miR-4271	CLIP-seq
MIRT2345079	hsa-miR-4279	CLIP-seq
MIRT2345080	hsa-miR-4307	CLIP-seq
MIRT1409059	hsa-miR-4325	CLIP-seq
MIRT2345081	hsa-miR-4446-5p	CLIP-seq
MIRT1409062	hsa-miR-4477a	CLIP-seq
MIRT2345082	hsa-miR-448	CLIP-seq
MIRT1409063	hsa-miR-4494	CLIP-seq
MIRT2345083	hsa-miR-4517	CLIP-seq
MIRT2345084	hsa-miR-4643	CLIP-seq
MIRT1409068	hsa-miR-4661-5p	CLIP-seq
MIRT2345085	hsa-miR-4699-3p	CLIP-seq
MIRT2345086	hsa-miR-4717-3p	CLIP-seq
MIRT2122703	hsa-miR-4722-3p	CLIP-seq
MIRT1409075	hsa-miR-4724-3p	CLIP-seq
MIRT2345087	hsa-miR-4725-3p	CLIP-seq
MIRT2345088	hsa-miR-4731-3p	CLIP-seq
MIRT1409078	hsa-miR-4733-5p	CLIP-seq
MIRT2345089	hsa-miR-4735-5p	CLIP-seq
MIRT2345090	hsa-miR-4755-5p	CLIP-seq
MIRT2345091	hsa-miR-4775	CLIP-seq
MIRT2345092	hsa-miR-4789-3p	CLIP-seq
MIRT2345093	hsa-miR-4794	CLIP-seq
MIRT2345094	hsa-miR-4801	CLIP-seq
MIRT1409086	hsa-miR-499a-5p	CLIP-seq
MIRT1409087	hsa-miR-500b	CLIP-seq
MIRT1409088	hsa-miR-501-5p	CLIP-seq
MIRT2345095	hsa-miR-520f	CLIP-seq
MIRT2345096	hsa-miR-590-3p	CLIP-seq
MIRT2345097	hsa-miR-642a	CLIP-seq
MIRT1409101	hsa-miR-664	CLIP-seq
MIRT1409011	hsa-miR-1298	CLIP-seq
MIRT1409065	hsa-miR-4659a-3p	CLIP-seq
MIRT1409066	hsa-miR-4659b-3p	CLIP-seq
MIRT1409101	hsa-miR-664	CLIP-seq
MIRT2345070	hsa-miR-1228	CLIP-seq
MIRT2692613	hsa-miR-3149	CLIP-seq
MIRT2692614	hsa-miR-411	CLIP-seq
MIRT2692615	hsa-miR-4708-5p	CLIP-seq
MIRT2345089	hsa-miR-4735-5p	CLIP-seq
MIRT2345091	hsa-miR-4775	CLIP-seq
MIRT2345093	hsa-miR-4794	CLIP-seq
MIRT2345096	hsa-miR-590-3p	CLIP-seq

Show/Hide all (86)

GO ID	Ontology	Definition	Evidence	Reference
GO:0000122	Process	Negative regulation of transcription by RNA polymerase II	IMP	24289924
GO:0000166	Function	Nucleotide binding	IEA
GO:0000209	Process	Protein polyubiquitination	IDA	20181722
GO:0000785	Component	Chromatin	IDA	20181722, 24289924
GO:0000979	Function	RNA polymerase II core promoter sequence-specific DNA binding	IMP	25412659
GO:0001091	Function	RNA polymerase II general transcription initiation factor binding	IPI	8625415
GO:0001181	Function	RNA polymerase I general transcription initiation factor activity	IDA	12498690
GO:0002039	Function	P53 binding	IPI	15053879
GO:0003677	Function	DNA binding	IEA
GO:0004402	Function	Histone acetyltransferase activity	IDA	8980232
GO:0004402	Function	Histone acetyltransferase activity	IEA
GO:0004672	Function	Protein kinase activity	IDA	24289924
GO:0004674	Function	Protein serine/threonine kinase activity	EXP	15053879
GO:0004674	Function	Protein serine/threonine kinase activity	IDA	8625415, 15053879
GO:0004674	Function	Protein serine/threonine kinase activity	IEA
GO:0005515	Function	Protein binding	IPI	7565781, 7590250, 7667268, 7680771, 7729427, 7824954, 9603525, 9674425, 9858607, 12498690, 14672934, 17884155, 18391197, 18548200, 20181722, 35271311
GO:0005524	Function	ATP binding	IEA
GO:0005634	Component	Nucleus	EXP	23332750
GO:0005634	Component	Nucleus	IDA	12498690, 25593309
GO:0005634	Component	Nucleus	IEA
GO:0005634	Component	Nucleus	ISS
GO:0005654	Component	Nucleoplasm	IDA	12498690
GO:0005654	Component	Nucleoplasm	IDA
GO:0005654	Component	Nucleoplasm	TAS
GO:0005667	Component	Transcription regulator complex	IPI	25412659
GO:0005669	Component	Transcription factor TFIID complex	IBA
GO:0005669	Component	Transcription factor TFIID complex	IDA	8625415, 14580349, 24927529, 25412659, 27007846, 29111974
GO:0005669	Component	Transcription factor TFIID complex	IEA
GO:0005669	Component	Transcription factor TFIID complex	IPI	23332750
GO:0005669	Component	Transcription factor TFIID complex	ISS
GO:0005669	Component	Transcription factor TFIID complex	TAS	12498690
GO:0005730	Component	Nucleolus	IDA	12498690
GO:0006325	Process	Chromatin organization	IEA
GO:0006338	Process	Chromatin remodeling	IEA
GO:0006352	Process	DNA-templated transcription initiation	IEA
GO:0006361	Process	Transcription initiation at RNA polymerase I promoter	IGI	12498690
GO:0006366	Process	Transcription by RNA polymerase II	IEA
GO:0006366	Process	Transcription by RNA polymerase II	IGI	9660973
GO:0006367	Process	Transcription initiation at RNA polymerase II promoter	IDA	17996705
GO:0006367	Process	Transcription initiation at RNA polymerase II promoter	IGI	25412659
GO:0006367	Process	Transcription initiation at RNA polymerase II promoter	ISS
GO:0006511	Process	Ubiquitin-dependent protein catabolic process	IDA	20181722
GO:0006974	Process	DNA damage response	IDA	24289924
GO:0010629	Process	Negative regulation of gene expression	IMP	17237821
GO:0016251	Function	RNA polymerase II general transcription initiation factor activity	IBA
GO:0016251	Function	RNA polymerase II general transcription initiation factor activity	IDA	17996705
GO:0016251	Function	RNA polymerase II general transcription initiation factor activity	IEA
GO:0016251	Function	RNA polymerase II general transcription initiation factor activity	IGI	25412659
GO:0016301	Function	Kinase activity	IDA	18548200
GO:0016301	Function	Kinase activity	IEA
GO:0016740	Function	Transferase activity	IEA
GO:0016746	Function	Acyltransferase activity	IEA
GO:0016922	Function	Nuclear receptor binding	IPI	20181722
GO:0017025	Function	TBP-class protein binding	IBA
GO:0017025	Function	TBP-class protein binding	IEA
GO:0017025	Function	TBP-class protein binding	IPI	9660973
GO:0030901	Process	Midbrain development	IGI	26637982
GO:0032436	Process	Positive regulation of proteasomal ubiquitin-dependent protein catabolic process	IDA	15053879
GO:0034644	Process	Cellular response to UV	IDA	24289924
GO:0042789	Process	MRNA transcription by RNA polymerase II	IDA	17884155
GO:0043565	Function	Sequence-specific DNA binding	ISS
GO:0045944	Process	Positive regulation of transcription by RNA polymerase II	IDA	20181722
GO:0046777	Process	Protein autophosphorylation	TAS	15053879
GO:0046982	Function	Protein heterodimerization activity	IPI	25412659
GO:0050821	Process	Protein stabilization	IDA	17237821
GO:0051123	Process	RNA polymerase II preinitiation complex assembly	IBA
GO:0051123	Process	RNA polymerase II preinitiation complex assembly	IPI	27007846
GO:0051123	Process	RNA polymerase II preinitiation complex assembly	ISS
GO:0060261	Process	Positive regulation of transcription initiation by RNA polymerase II	IDA	17884155
GO:0061628	Function	Histone H3K27me3 reader activity	IPI	24927529
GO:0061629	Function	RNA polymerase II-specific DNA-binding transcription factor binding	IPI	24289924
GO:0061631	Function	Ubiquitin conjugating enzyme activity	IDA	20181722
GO:0061733	Function	Protein-lysine-acetyltransferase activity	IEA
GO:0071318	Process	Cellular response to ATP	IDA	24289924
GO:0071339	Component	MLL1 complex	IDA	15960975
GO:0106310	Function	Protein serine kinase activity	IEA
GO:0140046	Function	Histone H4K16ac reader activity	IDA	17996705
GO:0140416	Function	Transcription regulator inhibitor activity	IDA	24289924
GO:0140566	Function	Histone reader activity	IDA	24927529
GO:0160207	Process	Positive regulation of androgen receptor signaling pathway	IDA	20181722
GO:1901796	Process	Regulation of signal transduction by p53 class mediator	TAS
GO:1901797	Process	Negative regulation of signal transduction by p53 class mediator	IDA	18548200
GO:1902806	Process	Regulation of cell cycle G1/S phase transition	TAS	12498690
GO:1905502	Function	Acetyl-CoA binding	IDA	24927529
GO:1905524	Process	Negative regulation of protein autoubiquitination	IDA	17237821
GO:2000059	Process	Negative regulation of ubiquitin-dependent protein catabolic process	IMP	17237821

MIM	HGNC	e!Ensembl
313650	11535	ENSG00000147133

P21675

Protein name

Transcription initiation factor TFIID subunit 1 (EC 2.3.1.48) (EC 2.7.11.1) (Cell cycle gene 1 protein) (TBP-associated factor 250 kDa) (p250) (Transcription initiation factor TFIID 250 kDa subunit) (TAF(II)250) (TAFII-250) (TAFII250)

Protein function

The TFIID basal transcription factor complex plays a major role in the initiation of RNA polymerase II (Pol II)-dependent transcription (PubMed:33795473). TFIID recognizes and binds promoters with or without a TATA box via its subunit TBP, a TAT

PDB

1EQF , 3AAD , 3UV4 , 3UV5 , 4RGW , 4YYM , 4YYN , 5FUR , 5I1Q , 5I29 , 5MG2 , 6BQD , 6FIC , 6MZD , 6MZL , 6MZM , 6P38 , 6P39 , 6P3A , 7EDX , 7EG7 , 7EG8 , 7EG9 , 7EGA , 7EGB , 7EGC , 7EGD , 7EGE , 7EGH , 7EGI , 7EGJ , 7ENA , 7ENC , 7JJG , 7JJH , 7JSP , 7JTC , 7K03 , 7K0D , 7K0U , 7K1P , 7K27 , 7K3O , 7K42 , 7K6F , 7L6X , 7LB0 , 7LB1 , 7LB2 , 7LB3 , 7N42

Family and domains

Pfam

Accession	ID	Position in sequence	Description	Type
PF09247	TBP-binding	24 → 86	TATA box-binding protein binding	Domain
PF12157	DUF3591	565 → 1028	Protein of unknown function (DUF3591)	Family
PF15288	zf-CCHC_6	1261 → 1300	Zinc knuckle	Domain
PF00439	Bromodomain	1389 → 1472	Bromodomain	Domain
PF00439	Bromodomain	1511 → 1595	Bromodomain	Domain

Sequence

MGPGCDLLLRTAATITAAAIMSDTDSDEDSAGGGPFSLAGFLFGNINGAGQLEGESVLDD
ECKKHLAGLGALGLGSLITELTANEELTGTDGALVNDEGWVRSTEDAVDYSDINEVAEDE
SRRYQQTMGSLQPLCHSDYDEDDYDADCEDIDCKLMPPPPPPPGPMKKDKDQDSITGEKV
DFSSSSDSESEMGPQEATQAESEDGKLTLPLAGIMQHDATKLLPSVTELFPEFRPGKVLR
FLRLFGPGKNVPSVWRSARRKRKKKHRELIQEEQIQEVECSVESEVSQKSLWNYDYAPPP
PPEQCLSDDEITMMAPVESKFSQSTGDIDKVTDTKPRVAEWRYGPARLWYDMLGVPEDGS
GFDYGFKLRKTEHEPVIKSRMIEEFRKLEENNGTDLLADENFLMVTQLHWEDDIIWDGED
VKHKGTKPQRASLAGWLPSSMTRNAMAYNVQQGFAATLDDDKPWYSIFPIDNEDLVYGRW
EDNIIWDAQAMPRLLEPPVLTLDPNDENLILEIPDEKEEATSNSPSKESKKESSLKKSRI
LLGKTGVIKEEPQQNMSQPEVKDPWNLSNDEYYYPKQQGLRGTFGGNIIQHSIPAVELRQ
PFFPTHMGPIKLRQFHRPPLKKYSFGALSQPGPHSVQPLLKHIKKKAKMREQERQASGGG
EMFFMRTPQDLTGKDGDLILAEYSEENGPLMMQVGMATKIKNYYKRKPGKDPGAPDCKYG
ETVYCHTSPFLGSLHPGQLLQAFENNLFRAPIYLHKMPETDFLIIRTRQGYYIRELVDIF
VVGQQCPLFEVPGPNSKRANTHIRDFLQVFIYRLFWKSKDRPRRIRMEDIKKAFPSHSES
SIRKRLKLCADFKRTGMDSNWWVLKSDFRLPTEEEIRAMVSPEQCCAYYSMIAAEQRLKD
AGYGEKSFFAPEEENEEDFQMKIDDEVRTAPWNTTRAFIAAMKGKCLLEVTGVADPTGCG
EGFSYVKIPNKPTQQKDDKEPQPVKKTVTGTDADLRRLSLKNAKQLLRKFGVPEEEIKKL
SRWEVIDVVRTMSTEQARSGEGPMSKFARGSRFSVAEHQERYKEECQRIFDLQNKVLSST
EVLSTDTDSSSAEDSDFEEMGKNIENMLQNKKTSSQLSREREEQERKELQRMLLAAGSAA
SGNNHRDDDTASVTSLNSSATGRCLKIYRTFRDEEGKEYVRCETVRKPAVIDAYVRIRTT
KDEEFIRKFALFDEQHREEMRKERRRIQEQLRRLKRNQEKEKLKGPPEKKPKKMKERPDL
KLKCGACGAIGHMRTNKFCPLYYQTNAPPSNPVAMTEEQEEELEKTVIHNDNEELIKVEG
TKIVLGKQLIESADEVRRKSLVLKFPKQQLPPKKKRRVGTTVHCDYLNRPHKSIHRRRTD
PMVTLSSILESIINDMRDLPNTYPFHTPVNAKVVKDYYKIITRPMDLQTLRENVRKRLYP
SREEFREHLELIVKNSATYNGPKHSLTQISQSMLDLCDEKLKEKEDKLARLEKAINPLLD
DDDQVAFSFILDNIVTQKMMAVPDSWPFHHPVNKKFVPDYYKVIVNPMDLETIRKNISKH
KYQSRESFLDDVNLILANSVKYNGPESQYTKTAQEIVNVCYQTLTEYDEHLTQLEKDICT
AKEAALEEAELESLDPMTPGPYTPQPPDLYDTNTSLSMSRDASVFQDESNMSVLDIPSAT
PEKQVTQEGEDGDGDLADEEEGTVQQPQASVLYEDLLMSEGEDDEEDAGSDEEGDNPFSA
IQLSESGSDSDVGSGGIRPKQPRMLQENTRMDMENEESMMSYEGDGGEASHGLEDSNISY
GSYEEPDPKSNTQDTSFSSIGGYEVSEEEEDEEEEEQRSGPSVLSQVHLSEDEEDSEDFH
SIAGDSDLDSDE

Sequence length

1872

Interactions

View interactions

	KEGG		Reactome
	Basal transcription factors		RNA Polymerase II Pre-transcription Events Regulation of TP53 Activity through Phosphorylation RNA Polymerase II Promoter Escape RNA Polymerase II Transcription Pre-Initiation And Promoter Opening RNA Polymerase II Transcription Initiation RNA Polymerase II Transcription Initiation And Promoter Clearance

215

Show/Hide Causal Diseases (8)

Phenotype Name	Clinical Significance	dbSNP ID	RCV Accession
Causal Diseases associated with Pathogenic or Likely Pathogenic variants in ClinVar
Heart, malformation of	Likely pathogenic; Pathogenic	rs2148106783, rs2148276174, rs2034628748, rs2148488251, rs864321631, rs1057518019, rs1064793874, rs1602489684, rs1602506017, rs1602520317, rs1602572645	RCV001849521 RCV001849722 RCV001849723 RCV001849727 RCV001849343 RCV001849367 RCV001849379 RCV001849455 RCV001849457 RCV001849458 RCV001849460
Intellectual disability	Likely pathogenic	rs2034442612, rs2033574124, rs2034677583	RCV001270030 RCV001260862 RCV001260855
Intellectual disability, X-linked, syndromic 33	Likely pathogenic; Pathogenic	rs1602490113, rs2148106783, rs2148612232, rs2148488146, rs2148276174, rs2148488251, rs864321627, rs864321628, rs864321631, rs2520597428, rs2520282379, rs2520676862, rs1057518019, rs1064793874, rs1131691982 View all (11 more)	RCV001329291 RCV001543356 RCV001733858 RCV001814676 RCV002274226 RCV002274227 RCV000203524 RCV000203551 RCV000203549 RCV003231001 RCV003236655 RCV005254763 RCV001027752 RCV001027760 RCV001027755 RCV000656395 RCV000735897 RCV002274104 RCV001027746 RCV001027747 RCV001027750 RCV001027753 RCV001027754 RCV001027758 RCV001027761 RCV002246263
Marfanoid habitus and intellectual disability	Likely pathogenic; Pathogenic	rs1602624914	RCV000850429
See cases	Likely pathogenic; Pathogenic	rs2148488085, rs2520226008	RCV001420306 RCV003128470
TAF1-related disorder	Likely pathogenic; Pathogenic	rs1602624950	RCV004753055
TAF1-related syndromic intellectual disability	Likely pathogenic	rs1602506017	RCV001270906
Thyroid cancer, nonmedullary, 1	Likely pathogenic	rs2520597428, rs1602538353	RCV005930800 RCV005906944

Show/Hide Unknown Diseases (15)

Phenotype Name	Clinical Significance	dbSNP ID	RCV Accession
Unknown Diseases with uncertain, conflicting, or no pathogenic evidence in ClinVar
Autism spectrum disorder	Uncertain significance	rs2034289029	RCV003125893
Clear cell carcinoma of kidney	Benign	rs28382158	RCV005886493
Colorectal cancer	Benign	rs28382158	RCV005886494
Gastric cancer	Benign	rs28382158	RCV005886495
Genetic developmental and epileptic encephalopathy	Benign; Likely benign	rs376706489	RCV005626240
Hepatocellular carcinoma	Benign	rs28382158	RCV005886489
Lung cancer	Benign	rs28382158	RCV005886499
Malignant tumor of esophagus	Benign	rs28382158	RCV005886490
Nonpapillary renal cell carcinoma	Benign	rs28382158	RCV005886491
Ovarian cancer	Benign	rs28382158	RCV005886492
Ovarian serous cystadenocarcinoma	Benign	rs28382158	RCV005886496
TAF1-related X-linked syndromic intellectual disability	Uncertain significance	rs754359966	RCV002467389
Thymoma	Benign	rs28382158	RCV005886498
Uterine carcinosarcoma	Benign	rs28382158	RCV005886497
X-linked dystonia-parkinsonism	Uncertain significance; Conflicting classifications of pathogenicity; Benign; Likely benign	rs2033909793, rs368024152, rs2148443174, rs2520281065, rs2520218415, rs2034364813, rs2520281721, rs397509359, rs1060499594, rs141145230, rs148007434, rs142496099, rs370696191, rs202158967, rs758753633	RCV001329290 RCV001825222 RCV003225752 RCV003992624 RCV003147876 RCV003494524 RCV003990707 RCV000020067 RCV000477788 RCV002507481 RCV002501197 RCV002487888 RCV002507460 RCV002501275 RCV002507489

Show/Hide Text Mining Associations (31)

Disease Name	Relationship Type	References
Associations from Text MiningDisease associations identified through Pubtator
Blood Coagulation Disorders	Associate	39252244
Carcinogenesis	Associate	27571988
Carcinoma Hepatocellular	Associate	30249878
Charcot Marie Tooth disease Type 2B	Associate	7912286
Colitis Ulcerative	Associate	39252244
Colorectal Neoplasms	Associate	27571988, 35880088
Diabetes Mellitus Type 2	Associate	27906902
Dubowitz syndrome	Associate	33098347
Dystonia	Associate	16366515, 20200153, 31523486, 38042508
Dystonia 3 Torsion X Linked	Associate	12928496, 1550125, 16366515, 20200153, 25604858, 26769797, 26879577, 28017799, 29229810, 29474915, 29474918, 32975318, 33315879, 35052466, 35216353 View all (6 more)
Endometrial Neoplasms	Associate	28485815
Glioma	Associate	35419917
Heart Defects Congenital	Associate	36958711
Hypoglycemia	Associate	27906902
Immunologic Deficiency Syndromes	Associate	39252244
Jensen syndrome	Associate	31985533
Labyrinth Diseases	Associate	31985533
Leiomyoma	Associate	21685710
Leukemia Myeloid Acute	Associate	28498449
Microsatellite Instability	Associate	27571988
Neoplasms	Associate	20181722, 25435355, 27045317, 27571988
Neurodegenerative Diseases	Associate	23849371
Parkinson Disease Secondary	Associate	16366515
Parkinsonism Dystonia Infantile	Associate	1518853, 7668293
Peritoneal Neoplasms	Associate	31171626
Precursor T Cell Lymphoblastic Leukemia Lymphoma	Associate	24449214
Prostatic Neoplasms	Associate	20181722
Spasms Infantile	Associate	29667327
Thyroid Carcinoma Anaplastic	Associate	18958156
Thyroid Neoplasms	Associate	31135274
Vascular Diseases	Associate	28673515

TAF1 (TATA-box binding protein associated factor 1)