Gene
Entrez ID Entrez Gene ID - the GENE ID in NCBI Gene database.
6857
Gene name Gene Name - the full gene name approved by the HGNC.
Synaptotagmin 1
Gene symbol Gene Symbol - the official gene symbol approved by the HGNC.
SYT1
Synonyms (NCBI Gene) Gene synonyms aliases
BAGOS, P65, SVP65, SYT
Disease Acronyms (UniProt) Disease acronyms from UniProt database
BAGOS
Chromosome Chromosome number
12
Chromosome location Chromosomal Location - indicates the cytogenetic location of the gene or region on the chromosome.
12q21.2
Summary Summary of gene provided in NCBI Entrez Gene.
The synaptotagmins are integral membrane proteins of synaptic vesicles thought to serve as Ca(2+) sensors in the process of vesicular trafficking and exocytosis. Calcium binding to synaptotagmin-1 participates in triggering neurotransmitter release at the
SNPs SNP information provided by dbSNP.
SNP ID Visualize variation Clinical significance Consequence
rs144900171 C>G,T Likely-benign, likely-pathogenic, pathogenic Missense variant, synonymous variant, coding sequence variant
rs1135402761 T>C Likely-pathogenic, pathogenic Missense variant, coding sequence variant
rs1555226395 G>A Likely-pathogenic Missense variant, coding sequence variant
rs1565922388 T>A Likely-pathogenic, pathogenic Missense variant, coding sequence variant
rs1565922395 A>G Likely-pathogenic, pathogenic Missense variant, coding sequence variant
miRNA miRNA information provided by mirtarbase database.
miRTarBase ID miRNA Experiments Reference
MIRT006304 hsa-miR-34a-5p Luciferase reporter assay, Western blot 22160687
MIRT006304 hsa-miR-34a-5p Luciferase reporter assay, Western blot 22160687
MIRT006304 hsa-miR-34a-5p Luciferase reporter assay, Western blot 22160687
MIRT006304 hsa-miR-34a-5p Luciferase reporter assay, Western blot 22160687
MIRT006304 hsa-miR-34a-5p Luciferase reporter assay, Western blot 22160687
Gene ontology (GO) Gene ontology information of associated ontologies with gene provided by GO database.
GO ID Ontology Definition Evidence Reference
GO:0000149 Function SNARE binding IBA 21873635
GO:0000149 Function SNARE binding ISS
GO:0001786 Function Phosphatidylserine binding IBA 21873635
GO:0005509 Function Calcium ion binding IBA 21873635
GO:0005513 Process Detection of calcium ion TAS 11438518
Other IDs Other ids provides unique ids of gene in databases such as OMIM, HGNC, ENSEMBLE.
MIM HGNC e!Ensembl
185605 11509 ENSG00000067715
Protein
UniProt ID P21579
Protein name Synaptotagmin-1 (Synaptotagmin I) (SytI) (p65)
Protein function Calcium sensor that participates in triggering neurotransmitter release at the synapse (By similarity). May have a regulatory role in the membrane interactions during trafficking of synaptic vesicles at the active zone of the synapse (By similar
PDB 2K45 , 2K4A , 2K8M , 2KI6 , 2LHA , 2N1T , 2R83 , 3F00 , 3F01 , 3F04 , 3F05 , 4ISQ , 4V11 , 6G5F , 6G5K , 6QNS , 6TZ3 , 6U41 , 6U4U , 6U4W , 6ZVN , 7TUA , 7U4Q , 8B8I
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF00168 C2 157 263 C2 domain Domain
PF00168 C2 288 394 C2 domain Domain
Tissue specificity TISSUE SPECIFICITY: Expressed in melanocytes (PubMed:23999003). {ECO:0000269|PubMed:23999003}.
Sequence
MVSESHHEALAAPPVTTVATVLPSNATEPASPGEGKEDAFSKLKEKFMNELHKIPLPPWA
LIAIAIVAVLLVLTCCFCICKKCLFKKKNKKKGKEKGGKNAINMKDVKDLGKTMKDQALK
DDDAETGLTDGEEKEEPKEEEKLGKLQYSLDYDFQNNQLLVGIIQAAELPALDMGGTSDP
YVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELGGKTLVMAVYDFDRFSKHDI
IGEFKVPMNTVDFGHVTEEWRDL
QSAEKEEQEKLGDICFSLRYVPTAGKLTVVILEAKNL
KKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFEQIQKVQVVV
TVLDYDKIGKNDAIGKVFVGYNSTGAELRHWSDM
LANPRRPIAQWHTLQVEEEVDAMLAV
KK
Sequence length 422
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  KEGG   Reactome
  Synaptic vesicle cycle   Serotonin Neurotransmitter Release Cycle
Norepinephrine Neurotransmitter Release Cycle
Glutamate Neurotransmitter Release Cycle
Dopamine Neurotransmitter Release Cycle
Acetylcholine Neurotransmitter Release Cycle
Toxicity of botulinum toxin type B (BoNT/B)
Toxicity of botulinum toxin type G (BoNT/G)
Cargo recognition for clathrin-mediated endocytosis
Clathrin-mediated endocytosis
GABA synthesis, release, reuptake and degradation
Associated diseases Disease information provided by ClinVar, GenCC, and GWAS databases.
Causal
Disease term Disease name dbSNP ID References
Developmental delay Global developmental delay rs28941770, rs199469464, rs281865469, rs143747297, rs398123009, rs587777428, rs786205133, rs606231459, rs797044854, rs797045027, rs864309504, rs878853160, rs886039902, rs886042046, rs886041291
View all (32 more)
Hypotonia-oculomotor anomalies-hyperkinetic movements-developmental delay syndrome Infantile hypotonia-oculomotor anomalies-hyperkinetic movements-developmental delay syndrome rs1135402761, rs1565922388, rs1565922395, rs1565962725, rs144900171, rs1593076474
Mental retardation Moderate intellectual disability, Intellectual Disability rs5742905, rs267607136, rs267607137, rs2131714307, rs267607038, rs267607042, rs80338685, rs137853127, rs80338815, rs28940893, rs387906309, rs121908096, rs121908099, rs587784365, rs121918315
View all (1024 more)
25705886, 30107533
Hypotonia Neonatal Hypotonia rs141138948, rs397517172, rs869312824, rs1583169151
Unknown
Disease term Disease name Evidence References Source
Colorectal Cancer Colorectal Cancer In summary, our data strongly demonstrated that upregulation of GRB7 conferred MEKi resistance in CRC cells with KRAS mutations by mediating RTK signaling through the recruitment of PLK1. GWAS, CBGDA
Systemic lupus erythematosus Systemic lupus erythematosus GWAS
Borderline personality disorder Borderline personality disorder GWAS
Insomnia Insomnia GWAS
Associations from Text Mining
Disease Name Relationship Type References
Abnormalities Drug Induced Associate 21333201, 35101335
Adenocarcinoma of Lung Associate 35627270
Alzheimer Disease Associate 30342961
Alzheimer Disease Inhibit 32483284, 32776690
Antisocial Personality Disorder Associate 31059723
Attention Deficit Disorder with Hyperactivity Associate 31059723, 31562556
Brain Ischemia Associate 35257887
Calcium Metabolism Disorders Associate 21102408
Carcinogenesis Stimulate 21996728
Chronic Traumatic Encephalopathy Inhibit 32483284