Gene Gene information from NCBI Gene database.
Entrez ID 6850
Gene name Spleen associated tyrosine kinase
Gene symbol SYK
Synonyms (NCBI Gene)
IMD82p72-Syk
Chromosome 9
Chromosome location 9q22.2
Summary This gene encodes a member of the family of non-receptor type Tyr protein kinases. This protein is widely expressed in hematopoietic cells and is involved in coupling activated immunoreceptors to downstream signaling events that mediate diverse cellular r
miRNA miRNA information provided by mirtarbase database.
357
miRTarBase ID miRNA Experiments Reference
MIRT043443 hsa-miR-331-3p CLASH 23622248
MIRT040474 hsa-miR-615-3p CLASH 23622248
MIRT038521 hsa-miR-99b-3p CLASH 23622248
MIRT709777 hsa-miR-4766-5p HITS-CLIP 19536157
MIRT709775 hsa-miR-3182 HITS-CLIP 19536157
Transcription factors Transcription factors information provided by TRRUST V2 database.
1
Transcription factor Regulation Reference
JUN Unknown 22354960
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
186
GO ID Ontology Definition Evidence Reference
GO:0000045 Process Autophagosome assembly IDA 28890335
GO:0000166 Function Nucleotide binding IEA
GO:0001525 Process Angiogenesis IEA
GO:0001775 Process Cell activation IEA
GO:0001775 Process Cell activation ISS
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
600085 11491 ENSG00000165025
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
P43405
Protein name Tyrosine-protein kinase SYK (EC 2.7.10.2) (Spleen tyrosine kinase) (p72-Syk)
Protein function Non-receptor tyrosine kinase which mediates signal transduction downstream of a variety of transmembrane receptors including classical immunoreceptors like the B-cell receptor (BCR). Regulates several biological processes including innate and ad
PDB 1A81 , 1CSY , 1CSZ , 1XBA , 1XBB , 1XBC , 3BUW , 3EMG , 3FQE , 3FQH , 3FQS , 3SRV , 3TUB , 3TUC , 3TUD , 3VF8 , 3VF9 , 4DFL , 4DFN , 4F4P , 4FL1 , 4FL2 , 4FL3 , 4FYN , 4FYO , 4FZ6 , 4FZ7 , 4GFG , 4I0R , 4I0S , 4I0T , 4PUZ , 4PV0 , 4PX6 , 4RSS , 4RX7 , 4RX8 , 4RX9 , 4WNM , 4XG2 , 4XG3 , 4XG4 , 4XG6 , 4XG7 , 4XG8 , 4XG9 , 4YJO , 4YJP , 4YJQ , 4YJR , 4YJS
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF00017 SH2 15 92 SH2 domain Domain
PF00017 SH2 168 244 SH2 domain Domain
PF07714 PK_Tyr_Ser-Thr 371 626 Protein tyrosine and serine/threonine kinase Domain
Tissue specificity TISSUE SPECIFICITY: Widely expressed in hematopoietic cells (at protein level) (PubMed:8163536). Expressed in neutrophils (at protein level) (PubMed:15123770). Within the B-cell compartment, expressed from pro- and pre-B cells to plasma cells (PubMed:8163
Sequence
Sequence length 635
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  KEGG  Reactome
  NF-kappa B signaling pathway
Phospholipase D signaling pathway
PI3K-Akt signaling pathway
Osteoclast differentiation
Platelet activation
Neutrophil extracellular trap formation
C-type lectin receptor signaling pathway
Natural killer cell mediated cytotoxicity
B cell receptor signaling pathway
Fc epsilon RI signaling pathway
Fc gamma R-mediated phagocytosis
Tuberculosis
Kaposi sarcoma-associated herpesvirus infection
Herpes simplex virus 1 infection
Epstein-Barr virus infection
Coronavirus disease - COVID-19
Viral carcinogenesis
  GPVI-mediated activation cascade
FCGR activation
Regulation of actin dynamics for phagocytic cup formation
Role of phospholipids in phagocytosis
DAP12 signaling
Fc epsilon receptor (FCERI) signaling
Role of LAT2/NTAL/LAB on calcium mobilization
FCERI mediated MAPK activation
FCERI mediated Ca+2 mobilization
Integrin signaling
Dectin-2 family
Interleukin-2 signaling
Regulation of signaling by CBL
FCGR3A-mediated IL10 synthesis
FCGR3A-mediated phagocytosis
Antigen activates B Cell Receptor (BCR) leading to generation of second messengers
Associated diseases Disease associations from ClinVar categorized as Causal (Pathogenic/Likely Pathogenic) or Unknown.
42
Causal Diseases associated with Pathogenic or Likely Pathogenic variants in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession
Arthritis Likely pathogenic; Pathogenic rs1304839707, rs1827861920, rs1828636794 RCV001270703
RCV001270909
RCV001270911
Colitis Likely pathogenic; Pathogenic rs1304839707, rs1827861920, rs1828636794 RCV001270703
RCV001270909
RCV001270911
Decreased circulating immunoglobulin concentration Likely pathogenic; Pathogenic rs1304839707, rs1827861920, rs1828636794 RCV001270703
RCV001270909
RCV001270911
Immunodeficiency Likely pathogenic; Pathogenic rs1304839707, rs1827861920, rs1828636794 RCV001270703
RCV001270909
RCV001270911
Unknown Diseases with uncertain, conflicting, or no pathogenic evidence in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession
Acute myeloid leukemia Benign rs290223 RCV005903590
Cervical cancer Benign rs290223 RCV005903592
Hepatocellular carcinoma Benign rs290223, rs2126053 RCV005927774
RCV005927777
Joint swelling Conflicting classifications of pathogenicity rs1828636794 RCV001270908
Associations from Text MiningDisease associations identified through Pubtator
Disease Name Relationship Type References
Acrocephalosyndactylia Stimulate 30898992
Adenocarcinoma of Lung Associate 27461624, 35868661
Anemia Sickle Cell Associate 11698299
Anti Neutrophil Cytoplasmic Antibody Associated Vasculitis Associate 36428281
Arthritis Rheumatoid Associate 16452391, 38350168
Asthma Associate 8590001
Atherosclerosis Associate 22321643, 28260035
Autoimmune Diseases Associate 25715120, 31616406, 37301715
Blood Platelet Disorders Associate 29297721, 33267658, 35309299
Breast Neoplasms Associate 11859072, 12477728, 17214368, 19435818, 20562096, 20628393, 22451900, 22864779, 23613720, 23684705, 23803121, 24523870, 24914616, 25092868, 26126114
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