Gene Gene information from NCBI Gene database.
Entrez ID 6760
Gene name SS18 subunit of BAF chromatin remodeling complex
Gene symbol SS18
Synonyms (NCBI Gene)
SMARCL1SSXTSYT
Chromosome 18
Chromosome location 18q11.2
miRNA miRNA information provided by mirtarbase database.
777
miRTarBase ID miRNA Experiments Reference
MIRT021673 hsa-miR-140-3p Sequencing 20371350
MIRT024343 hsa-miR-215-5p Microarray 19074876
MIRT026660 hsa-miR-192-5p Microarray 19074876
MIRT046813 hsa-miR-222-3p CLASH 23622248
MIRT043346 hsa-miR-331-3p CLASH 23622248
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
28
GO ID Ontology Definition Evidence Reference
GO:0000226 Process Microtubule cytoskeleton organization IEA
GO:0000785 Component Chromatin NAS 29374058
GO:0000902 Process Cell morphogenesis IEA
GO:0003713 Function Transcription coactivator activity IBA
GO:0003713 Function Transcription coactivator activity IDA 15919756
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
600192 11340 ENSG00000141380
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
Q15532
Protein name Protein SSXT (Protein SYT) (Synovial sarcoma translocated to X chromosome protein)
Protein function Appears to function synergistically with RBM14 as a transcriptional coactivator. Isoform 1 and isoform 2 function in nuclear receptor coactivation. Isoform 1 and isoform 2 function in general transcriptional coactivation. Component of SWI/SNF ch
PDB 7VRB
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF05030 SSXT 13 74 SSXT protein (N-terminal region) Family
Tissue specificity TISSUE SPECIFICITY: Fairly ubiquitously expressed. Expressed in synovial sarcomas and in other human cell lines. The fusion genes SSXT-SSX1 and SSXT-SSX2 are expressed only in synovial sarcomas.
Sequence
MSVAFAAPRQRGKGEITPAAIQKMLDDNNHLIQCIMDSQNKGKTSECSQYQQMLHTNLVY
LATIADSNQNMQSL
LPAPPTQNMPMGPGGMNQSGPPPPPRSHNMPSDGMVGGGPPAPHMQ
NQMNGQMPGPNHMPMQGPGPNQLNMTNSSMNMPSSSHGSMGGYNHSVPSSQSMPVQNQMT
MSQGQPMGNYGPRPNMSMQPNQGPMMHQQPPSQQYNMPQGGGQHYQGQQPPMGMMGQVNQ
GNHMMGQRQIPPYRPPQQGPPQQYSGQEDYYGDQYSHGGQGPPEGMNQQYYPDGHNDYGY
QQPSYPEQGYDRPYEDSSQHYYEGGNSQYGQQQDAYQGPPPQQGYPPQQQQYPGQQGYPG
QQQGYGPSQGGPGPQYPNYPQGQGQQYGGYRPTQPGPPQPPQQRPYGYDQGQYGNYQQ
Sequence length 418
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  KEGG 
  ATP-dependent chromatin remodeling
Transcriptional misregulation in cancer