Gene
Entrez ID Entrez Gene ID - the GENE ID in NCBI Gene database.
650
Gene name Gene Name - the full gene name approved by the HGNC.
Bone morphogenetic protein 2
Gene symbol Gene Symbol - the official gene symbol approved by the HGNC.
BMP2
Synonyms (NCBI Gene) Gene synonyms aliases
BDA2, BMP2A, SSFSC, SSFSC1
Disease Acronyms (UniProt) Disease acronyms from UniProt database
BDA2, SSFSC1
Chromosome Chromosome number
20
Chromosome location Chromosomal Location - indicates the cytogenetic location of the gene or region on the chromosome.
20p12.3
Summary Summary of gene provided in NCBI Entrez Gene.
This gene encodes a secreted ligand of the TGF-beta (transforming growth factor-beta) superfamily of proteins. Ligands of this family bind various TGF-beta receptors leading to recruitment and activation of SMAD family transcription factors that regulate
SNPs SNP information provided by dbSNP.
SNP ID Visualize variation Clinical significance Consequence
rs147542801 G>A Conflicting-interpretations-of-pathogenicity Coding sequence variant, synonymous variant
rs149465465 C>T Conflicting-interpretations-of-pathogenicity Coding sequence variant, synonymous variant
rs1057523275 C>T Uncertain-significance, likely-pathogenic Stop gained, coding sequence variant
rs1197846053 C>T Pathogenic Stop gained, coding sequence variant
rs1555785715 G>T Likely-pathogenic Stop gained, coding sequence variant
miRNA miRNA information provided by mirtarbase database.
miRTarBase ID miRNA Experiments Reference
MIRT017583 hsa-miR-335-5p Microarray 18185580
MIRT029250 hsa-miR-26b-5p Microarray 19088304
MIRT053202 hsa-miR-17-5p Flow, Luciferase reporter assay, qRT-PCR, Western blot 23399447
MIRT053203 hsa-miR-106a-5p Flow, Luciferase reporter assay, qRT-PCR, Western blot 23399447
MIRT524752 hsa-miR-1277-5p HITS-CLIP 21572407
Transcription factors
Transcription factor Regulation Reference
DNMT1 Repression 21551187
HEY1 Repression 21945409
NFKB1 Activation 16835229
RELA Activation 16835229
Gene ontology (GO) Gene ontology information of associated ontologies with gene provided by GO database.
GO ID Ontology Definition Evidence Reference
GO:0000122 Process Negative regulation of transcription by RNA polymerase II IBA 21873635
GO:0000122 Process Negative regulation of transcription by RNA polymerase II IDA 9187146, 19736317
GO:0000187 Process Activation of MAPK activity IDA 17202865, 22540193
GO:0001501 Process Skeletal system development TAS 2315314
GO:0001649 Process Osteoblast differentiation IDA 15150273, 22705305
Other IDs Other ids provides unique ids of gene in databases such as OMIM, HGNC, ENSEMBLE.
MIM HGNC e!Ensembl
112261 1069 ENSG00000125845
Protein
UniProt ID P12643
Protein name Bone morphogenetic protein 2 (BMP-2) (Bone morphogenetic protein 2A) (BMP-2A)
Protein function Growth factor of the TGF-beta superfamily that plays essential roles in many developmental processes, including cardiogenesis, neurogenesis, and osteogenesis (PubMed:18436533, PubMed:24362451, PubMed:31019025). Induces cartilage and bone formati
PDB 1ES7 , 1REU , 1REW , 2GOO , 2H62 , 2H64 , 2QJ9 , 2QJA , 2QJB , 3BK3 , 3BMP , 4MID , 4N1D , 4UHY , 4UHZ , 4UI0 , 4UI1 , 4UI2 , 6OMN , 7AG0 , 8E3G
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF00688 TGFb_propeptide 35 267 TGF-beta propeptide Family
PF00019 TGF_beta 295 395 Transforming growth factor beta like domain Domain
Tissue specificity TISSUE SPECIFICITY: Particularly abundant in lung, spleen and colon and in low but significant levels in heart, brain, placenta, liver, skeletal muscle, kidney, pancreas, prostate, ovary and small intestine.
Sequence
Sequence length 396
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  KEGG   Reactome
  Cytokine-cytokine receptor interaction
TGF-beta signaling pathway
Hippo signaling pathway
Pathways in cancer
Basal cell carcinoma
  Signaling by BMP
Molecules associated with elastic fibres
Transcriptional regulation by RUNX2
Associated diseases Disease information provided by ClinVar, GenCC, and GWAS databases.
Causal
Disease term Disease name dbSNP ID References
Atrial septal defect Atrial Septal Defects rs137852951, rs137852953, rs137852955, rs267607106, rs104893900, rs104893901, rs104893903, rs606231358, rs606231359, rs137852683, rs606231360, rs104893907, rs104894073, rs1585703301, rs104894074
View all (25 more)
Azoospermia Azoospermia rs200969445, rs144567652, rs765353898
Brachydactyly BRACHYDACTYLY, TYPE A2, Brachydactyly type A2 rs121908949, rs28937580, rs121909082, rs104894122, rs863223289, rs863223290, rs104894121, rs1587657302, rs863223292, rs74315386, rs74315387, rs28936397, rs753691079, rs121909348, rs121917852
View all (22 more)
19327734, 29198724, 24710560, 29129813
Breast cancer Malignant neoplasm of breast rs587776547, rs1137887, rs137853007, rs587776650, rs80359351, rs80359714, rs121917783, rs104886456, rs121964878, rs80359874, rs80357868, rs80357508, rs387906843, rs80357569, rs80358158
View all (309 more)
16298037
Unknown
Disease term Disease name Evidence References Source
Cirrhosis Cirrhosis ClinVar
Congestive heart failure Congestive heart failure ClinVar
Trigonocephaly Trigonocephaly 23160099 ClinVar
Sagittal craniosynostosis Sagittal craniosynostosis GWAS
Associations from Text Mining
Disease Name Relationship Type References
Achondrogenesis type 2 Stimulate 32790806
Acute Kidney Injury Stimulate 22496405
Adenoameloblastoma Associate 27780042
Adenocarcinoma Associate 25924783
Adenocarcinoma of Lung Inhibit 23298487, 34036102
Adenocarcinoma of Lung Associate 25924783
Adenoma Associate 20949628
Alagille Syndrome Associate 21671386
Ameloblastoma Associate 18854600, 27780042
Anemia Associate 20679527