Gene
Entrez ID Entrez Gene ID - the GENE ID in NCBI Gene database.
64127
Gene name Gene Name - the full gene name approved by the HGNC.
Nucleotide binding oligomerization domain containing 2
Gene symbol Gene Symbol - the official gene symbol approved by the HGNC.
NOD2
Synonyms (NCBI Gene) Gene synonyms aliases
ACUG, BLAU, BLAUS, CARD15, CD, CLR16.3, IBD1, NLRC2, NOD2B, PSORAS1, YAOS
Disease Acronyms (UniProt) Disease acronyms from UniProt database
BLAUS, IBD1, YAOS
Chromosome Chromosome number
16
Chromosome location Chromosomal Location - indicates the cytogenetic location of the gene or region on the chromosome.
16q12.1
Summary Summary of gene provided in NCBI Entrez Gene.
This gene is a member of the Nod1/Apaf-1 family and encodes a protein with two caspase recruitment (CARD) domains and six leucine-rich repeats (LRRs). The protein is primarily expressed in the peripheral blood leukocytes. It plays a role in the immune res
SNPs SNP information provided by dbSNP.
SNP ID Visualize variation Clinical significance Consequence
rs2066844 C>T Conflicting-interpretations-of-pathogenicity, risk-factor, likely-benign Missense variant, non coding transcript variant, coding sequence variant
rs2066845 G>C,T Conflicting-interpretations-of-pathogenicity, risk-factor, uncertain-significance, likely-benign Missense variant, non coding transcript variant, genic downstream transcript variant, coding sequence variant
rs2066847 C>-,CC Likely-benign, risk-factor, conflicting-interpretations-of-pathogenicity Non coding transcript variant, genic downstream transcript variant, frameshift variant, coding sequence variant
rs5743277 C>G,T Likely-benign, conflicting-interpretations-of-pathogenicity Missense variant, non coding transcript variant, coding sequence variant
rs5743289 C>G,T Likely-benign, risk-factor, pathogenic Genic downstream transcript variant, intron variant
miRNA miRNA information provided by mirtarbase database.
miRTarBase ID miRNA Experiments Reference
MIRT024612 hsa-miR-215-5p Microarray 19074876
MIRT026768 hsa-miR-192-5p Microarray 19074876
MIRT438655 hsa-miR-122-5p Luciferase reporter assay, qRT-PCR, Western blot 23872065
MIRT438655 hsa-miR-122-5p Luciferase reporter assay, qRT-PCR, Western blot 23872065
MIRT438655 hsa-miR-122-5p Luciferase reporter assay, qRT-PCR, Western blot 23872065
Transcription factors
Transcription factor Regulation Reference
NFKB1 Activation 12671897
NR1I2 Repression 14688115
Gene ontology (GO) Gene ontology information of associated ontologies with gene provided by GO database.
GO ID Ontology Definition Evidence Reference
GO:0000187 Process Activation of MAPK activity TAS
GO:0002221 Process Pattern recognition receptor signaling pathway IDA 31649195
GO:0002227 Process Innate immune response in mucosa IEA
GO:0002253 Process Activation of immune response IEA
GO:0002367 Process Cytokine production involved in immune response IMP 16260731
Other IDs Other ids provides unique ids of gene in databases such as OMIM, HGNC, ENSEMBLE.
MIM HGNC e!Ensembl
605956 5331 ENSG00000167207
Protein
UniProt ID Q9HC29
Protein name Nucleotide-binding oligomerization domain-containing protein 2 (Caspase recruitment domain-containing protein 15) (Inflammatory bowel disease protein 1)
Protein function Pattern recognition receptor (PRR) that detects bacterial peptidoglycan fragments and other danger signals and plays an important role in gastrointestinal immunity (PubMed:12514169, PubMed:12527755, PubMed:12626759, PubMed:15044951, PubMed:15998
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF00619 CARD 31 121 Caspase recruitment domain Domain
PF05729 NACHT 293 463 NACHT domain Domain
PF17779 NOD2_WH 545 597 NOD2 winged helix domain Domain
PF17776 NLRC4_HD2 603 757 NLRC4 helical domain HD2 Domain
PF13516 LRR_6 897 920 Leucine Rich repeat Repeat
PF13516 LRR_6 925 948 Leucine Rich repeat Repeat
PF13516 LRR_6 981 1004 Leucine Rich repeat Repeat
Tissue specificity TISSUE SPECIFICITY: Expressed in monocytes, macrophages, dendritic cells, hepatocytes, preadipocytes, epithelial cells of oral cavity, lung and intestine, with higher expression in ileal Paneth cells and in intestinal stem cells. {ECO:0000269|PubMed:11087
Sequence
MGEEGGSASHDEEERASVLLGHSPGCEMCSQEAFQAQRSQLVELLVSGSLEGFESVLDWL
LSWEVLSWEDYEGFHLLGQPLSHLARRLLDTVWNKGTWACQKLIAAAQEAQADSQSPKLH
G
CWDPHSLHPARDLQSHRPAIVRRLHSHVENMLDLAWERGFVSQYECDEIRLPIFTPSQR
ARRLLDLATVKANGLAAFLLQHVQELPVPLALPLEAATCKKYMAKLRTTVSAQSRFLSTY
DGAETLCLEDIYTENVLEVWADVGMAGPPQKSPATLGLEELFSTPGHLNDDADTVLVVGE
AGSGKSTLLQRLHLLWAAGQDFQEFLFVFPFSCRQLQCMAKPLSVRTLLFEHCCWPDVGQ
EDIFQLLLDHPDRVLLTFDGFDEFKFRFTDRERHCSPTDPTSVQTLLFNLLQGNLLKNAR
KVVTSRPAAVSAFLRKYIRTEFNLKGFSEQGIELYLRKRHHEP
GVADRLIRLLQETSALH
GLCHLPVFSWMVSKCHQELLLQEGGSPKTTTDMYLLILQHFLLHATPPDSASQGLGPSLL
RGRLPTLLHLGRLALWGLGMCCYVFSAQQLQAAQVSPDDISLGFLVRAKGVVPGSTAPLE
FLHITFQCFFAAFYLALSADVPPALLRHLFNCGRPGNSPMARLLPTMCIQASEGKDSSVA
ALLQKAEPHNLQITAAFLAGLLSREHWGLLAECQTSEKALLRRQACARWCLARSLRKHFH
SIPPAAPGEAKSVHAMPGFIWLIRSLYEMQEERLARK
AARGLNVGHLKLTFCSVGPTECA
ALAFVLQHLRRPVALQLDYNSVGDIGVEQLLPCLGVCKALYLRDNNISDRGICKLIECAL
HCEQLQKLALFNNKLTDGCAHSMAKLLACRQNFLALRLGNNYITAAGAQVLAEGLRGNTS
LQFLGFWGNRVGDEGAQALA
EALGDHQSLRWLSLVGNNIGSVGAQALALMLAKNVMLEEL
CLEENHLQDEGVCSLAEGLKKNSSLKILKLSNNCITYLGAEALLQALERNDTILEVWLRG
NTFSLEEVDKLGCRDTRLLL
Sequence length 1040
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  KEGG   Reactome
  NOD-like receptor signaling pathway
TNF signaling pathway
Tuberculosis
Inflammatory bowel disease
  NOD1/2 Signaling Pathway
TAK1 activates NFkB by phosphorylation and activation of IKKs complex
activated TAK1 mediates p38 MAPK activation
JNK (c-Jun kinases) phosphorylation and activation mediated by activated human TAK1
Ovarian tumor domain proteases
Interleukin-1 signaling
Associated diseases Disease information provided by ClinVar, GenCC, and GWAS databases.
Causal
Disease term Disease name dbSNP ID References
Anemia Anemia rs118204044, rs118204045, rs118204046, rs121918330, rs869320719, rs869312029, rs121918332, rs869320724, rs767094129, rs786205058, rs786205059, rs137853119, rs137853120, rs137853121, rs1384933966
View all (89 more)
Aortic aneurysm Aortic Aneurysm rs1555554098, rs267606902, rs121434526, rs121434527, rs121434528, rs387906592, rs387906781, rs387906782, rs397516685, rs397514037, rs112901682, rs397515325, rs397515330, rs794728025, rs112602953
View all (29 more)
Arthritis Arthritis rs1594890601, rs1594882933, rs184370809, rs776489319, rs1594883470
Autoinflammatory disease Autoinflammatory disorder rs777759523, rs121434352, rs28940578, rs28940580, rs121908146, rs121908148, rs121908150, rs80338807, rs121908679, rs104895319, rs104894176, rs28933973, rs28933376, rs137854447, rs61736587
View all (32 more)
4056967
Unknown
Disease term Disease name Evidence References Source
Asthma Asthma, Childhood asthma 21150878, 30929738, 31036433 ClinVar, GWAS
Crohn disease Crohn Disease, Regional enteritis, NON RARE IN EUROPE: Crohn disease 18371140, 17435756, 20570966, 29795570, 22412388, 23128233, 17447842, 26974007, 18438406, 28067908, 21102463, 16485124, 17684544, 11385576, 18587394
View all (44 more)
ClinVar
Sarcoidosis SARCOIDOSIS, EARLY-ONSET 15459013, 19467619 ClinVar
Yao syndrome Yao syndrome 26070941, 21914217 ClinVar
Associations from Text Mining
Disease Name Relationship Type References
Abortion Spontaneous Associate 29796818
Abscess Associate 19570052
Acute On Chronic Liver Failure Associate 31991025
Adenocarcinoma of Lung Associate 34268854
Adenomatous Polyposis Coli Associate 28633443
Alzheimer Disease Associate 31991025
Anal Gland Neoplasms Associate 26042516, 26147989, 26836588
Anemia Associate 39290705
Angioedemas Hereditary Associate 26953272
Appendicitis Associate 19570052, 24336024