Gene
Entrez ID Entrez Gene ID - the GENE ID in NCBI Gene database.
57231
Gene name Gene Name - the full gene name approved by the HGNC.
Sorting nexin 14
Gene symbol Gene Symbol - the official gene symbol approved by the HGNC.
SNX14
Synonyms (NCBI Gene) Gene synonyms aliases
RGS-PX2, SCAR20
Disease Acronyms (UniProt) Disease acronyms from UniProt database
SCAR20
Chromosome Chromosome number
6
Chromosome location Chromosomal Location - indicates the cytogenetic location of the gene or region on the chromosome.
6q14.3
Summary Summary of gene provided in NCBI Entrez Gene.
This gene encodes a member of the sorting nexin family. Members of this family have a phox (PX) phosphoinositide binding domain and are involved in intracellular trafficking. The encoded protein also contains a regulator of G protein signaling (RGS) domai
SNPs SNP information provided by dbSNP.
SNP ID Visualize variation Clinical significance Consequence
rs200277996 C>T Likely-pathogenic Splice donor variant, intron variant
rs201128942 C>A,T Pathogenic Coding sequence variant, 5 prime UTR variant, non coding transcript variant, intron variant, stop gained, missense variant
rs202176779 T>G Conflicting-interpretations-of-pathogenicity Intron variant
rs749656742 C>A,G Likely-pathogenic, pathogenic Splice donor variant
rs760752847 G>A Pathogenic 5 prime UTR variant, stop gained, coding sequence variant, non coding transcript variant
miRNA miRNA information provided by mirtarbase database.
miRTarBase ID miRNA Experiments Reference
MIRT1377047 hsa-miR-1324 CLIP-seq
MIRT1377048 hsa-miR-2277-3p CLIP-seq
MIRT1377049 hsa-miR-3129-3p CLIP-seq
MIRT1377050 hsa-miR-3942-3p CLIP-seq
MIRT1377051 hsa-miR-4282 CLIP-seq
Gene ontology (GO) Gene ontology information of associated ontologies with gene provided by GO database.
GO ID Ontology Definition Evidence Reference
GO:0005764 Component Lysosome IDA 25848753
GO:0005765 Component Lysosomal membrane IEA
GO:0005770 Component Late endosome IDA 25848753
GO:0005829 Component Cytosol IDA
GO:0015031 Process Protein transport IEA
Other IDs Other ids provides unique ids of gene in databases such as OMIM, HGNC, ENSEMBLE.
MIM HGNC e!Ensembl
616105 14977 ENSG00000135317
Protein
UniProt ID Q9Y5W7
Protein name Sorting nexin-14
Protein function Plays a role in maintaining normal neuronal excitability and synaptic transmission. May be involved in several stages of intracellular trafficking (By similarity). Required for autophagosome clearance, possibly by mediating the fusion of lysosom
PDB 4BGJ , 4PQO , 4PQP
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF02194 PXA 130 299 PXA domain Family
PF00615 RGS 336 467 Regulator of G protein signaling domain Domain
PF00787 PX 603 686 PX domain Domain
PF08628 Nexin_C 807 911 Sorting nexin C terminal Family
Tissue specificity TISSUE SPECIFICITY: Widely expressed both in fetal and adult tissues. {ECO:0000269|PubMed:25848753}.
Sequence
MVPWVRTMGQKLKQRLRLDVGREICRQYPLFCFLLLCLSAASLLLNRYIHILMIFWSFVA
GVVTFYCSLGPDSLLPNIFFTIKYKPKQLGLQELFPQGHSCAVCGKVKCKRHRPSLLLEN
YQPWLDLKISSKVDASLSEVLELVLENFVYPWYRDVTDDESFVDELRITLRFFASVLIRR
IHKVDIPSIITKKLLKAAMKHIEVIVKARQKVKNTEFLQQAALEEYGPELHVALRSRRDE
LHYLRKLTELLFPYILPPKATDCRSLTLLIREILSGSVFLPSLDFLADPDTVNHLLIIF
I
DDSPPEKATEPASPLVPFLQKFAEPRNKKPSVLKLELKQIREQQDLLFRFMNFLKQEGAV
HVLQFCLTVEEFNDRILRPELSNDEMLSLHEELQKIYKTYCLDESIDKIRFDPFIVEEIQ
RIAEGPYIDVVKLQTMRCLFEAYEHVLSLLENVFTPMFCHSDEYFRQ
LLRGAESPTRNSK
LNRGSLSLDDFRNTQKRGESFGISRIGSKIKGVFKSTTMEGAMLPNYGVAEGEDDFIEEG
IVVMEDDSPVEAVSTPNTPRNLAAWKISIPYVDFFEDPSSERKEKKERIPVFCIDVERND
RRAVGHEPEHWSVYRRYLEFYVLESKLTEFHGAFPDAQLPSKRIIGPKNYEFLKSKREEF
QEYLQKLLQHPELSNSQLLADFLSPN
GGETQFLDKILPDVNLGKIIKSVPGKLMKEKGQH
LEPFIMNFINSCESPKPKPSRPELTILSPTSENNKKLFNDLFKNNANRAENTERKQNQNY
FMEVMTVEGVYDYLMYVGRVVFQVPDWLHHLLMGTRILFKNTLEMYTDYYLQCKLEQLFQ
EHRLVSLITLLRDAIFCENTEPRSLQDKQKGAKQTFEEMMNYIPDLLVKCIGEETKYESI
RLLFDGLQQPV
LNKQLTYVLLDIVIQELFPELNKVQKEVTSVTSWM
Sequence length 946
Interactions View interactions
Associated diseases Disease information provided by ClinVar, GenCC, and GWAS databases.
Causal
Disease term Disease name dbSNP ID References
Apraxia Apraxias rs121908377, rs121908378, rs1135401820, rs1178491246, rs1584969672
Spinocerebellar ataxia Ataxia, Spinocerebellar, Spinocerebellar Ataxia Type 1, Spinocerebellar Ataxia Type 2, Spinocerebellar Ataxia Type 4, Spinocerebellar Ataxia Type 5, Spinocerebellar Ataxia Type 6 (disorder), Spinocerebellar Ataxia Type 7, SPINOCEREBELLAR ATAXIA, AUTOSOMAL RECESSIVE 20 rs80356538, rs80356539, rs56144125, rs28937887, rs80356544, rs80356540, rs80356542, rs1941485201, rs121918306, rs151344520, rs151344519, rs151344521, rs151344523, rs151344512, rs193922926
View all (203 more)
25439728
Autism Autistic behavior rs121964908, rs62643608, rs181327458, rs797046134, rs869312704, rs1555013332, rs876657679, rs1057518999, rs1057518658, rs771827120, rs1555187899, rs773080572, rs753871454, rs1684130791, rs1684180699
View all (8 more)
Brachydactyly Brachydactyly rs121908949, rs28937580, rs121909082, rs104894122, rs863223289, rs863223290, rs104894121, rs1587657302, rs863223292, rs74315386, rs74315387, rs28936397, rs753691079, rs121909348, rs121917852
View all (22 more)
Unknown
Disease term Disease name Evidence References Source
Spinocerebellar Ataxia autosomal recessive spinocerebellar ataxia 20 GenCC
Associations from Text Mining
Disease Name Relationship Type References
Alzheimer Disease Associate 26417591
Astrocytoma Associate 36070312
Cerebellar Ataxia Associate 25439728, 29635513
Cerebellar Diseases Associate 25439728
Gastrointestinal Stromal Tumors Associate 32736695
Hearing Loss Sensorineural Associate 25439728
Intellectual Disability Associate 25439728
Megalencephaly Associate 25439728
Seizures Associate 25439728
Spinocerebellar ataxia 20 Associate 27913285, 29635513