Gene Gene information from NCBI Gene database.
Entrez ID 55755
Gene name CDK5 regulatory subunit associated protein 2
Gene symbol CDK5RAP2
Synonyms (NCBI Gene)
C48Cep215MCPH3
Chromosome 9
Chromosome location 9q33.2
Summary This gene encodes a regulator of CDK5 (cyclin-dependent kinase 5) activity. The protein encoded by this gene is localized to the centrosome and Golgi complex, interacts with CDK5R1 and pericentrin (PCNT), plays a role in centriole engagement and microtubu
SNPs SNP information provided by dbSNP.
26
SNP ID Visualize variation Clinical significance Consequence
rs61756286 C>T Likely-benign, conflicting-interpretations-of-pathogenicity, not-provided Non coding transcript variant, upstream transcript variant, coding sequence variant, missense variant, genic upstream transcript variant
rs61758368 C>T Likely-benign, conflicting-interpretations-of-pathogenicity, uncertain-significance Synonymous variant, non coding transcript variant, 5 prime UTR variant, coding sequence variant
rs143341041 A>T Conflicting-interpretations-of-pathogenicity, uncertain-significance Genic downstream transcript variant, non coding transcript variant, missense variant, coding sequence variant
rs145272328 G>A Conflicting-interpretations-of-pathogenicity, uncertain-significance Missense variant, non coding transcript variant, 5 prime UTR variant, coding sequence variant
rs199422126 A>T Pathogenic Genic upstream transcript variant, coding sequence variant, non coding transcript variant, stop gained
miRNA miRNA information provided by mirtarbase database.
79
miRTarBase ID miRNA Experiments Reference
MIRT045392 hsa-miR-149-5p CLASH 23622248
MIRT042896 hsa-miR-324-3p CLASH 23622248
MIRT035984 hsa-miR-1301-3p CLASH 23622248
MIRT881315 hsa-miR-1911 CLIP-seq
MIRT881316 hsa-miR-3064-5p CLIP-seq
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
63
GO ID Ontology Definition Evidence Reference
GO:0000132 Process Establishment of mitotic spindle orientation IBA
GO:0000132 Process Establishment of mitotic spindle orientation IEA
GO:0000132 Process Establishment of mitotic spindle orientation ISS
GO:0000226 Process Microtubule cytoskeleton organization IDA 17959831
GO:0000226 Process Microtubule cytoskeleton organization IEA
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
608201 18672 ENSG00000136861
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
Q96SN8
Protein name CDK5 regulatory subunit-associated protein 2 (CDK5 activator-binding protein C48) (Centrosome-associated protein 215)
Protein function Potential regulator of CDK5 activity via its interaction with CDK5R1 (PubMed:15164053). Negative regulator of centriole disengagement (licensing) which maintains centriole engagement and cohesion. Involved in regulation of mitotic spindle orient
PDB 6X0V , 8RX1 , 9G40 , 9H9P
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF07989 Cnn_1N 59 131 Centrosomin N-terminal motif 1 Coiled-coil
Tissue specificity TISSUE SPECIFICITY: Widely expressed. Expressed in heart, brain, placenta, lung, liver, skeletal muscle, kidney and pancreas. {ECO:0000269|PubMed:10721722}.
Sequence
MMDLVLEEDVTVPGTLSGCSGLVPSVPDDLDGINPNAGLGNGLLPNVSEETVSPTRARNM
KDFENQITELKKENFNLKLRIYFLEERMQQEFHGPTEHIYKTNIELKVEVESLKRELQER
EQLLIKASKAV
ESLAEAGGSEIQRVKEDARKKVQQVEDLLTKRILLLEKDVTAAQAELEK
AFAGTETEKALRLRLESKLSEMKKMHEGDLAMALVLDEKDRLIEELKLSLKSKEALIQCL
KEEKSQMACPDENVSSGELRGLCAAPREEKERETEAAQMEHQKERNSFEERIQALEEDLR
EKEREIATEKKNSLKRDKAIQGLTMALKSKEKKVEELNSEIEKLSAAFAKAREALQKAQT
QEFQGSEDYETALSGKEALSAALRSQNLTKSTENHRLRRSIKKITQELSDLQQERERLEK
DLEEAHREKSKGDCTIRDLRNEVEKLRNEVNEREKAMENRYKSLLSESNKKLHNQEQVIK
HLTESTNQKDVLLQKFNEKDLEVIQQNCYLMAAEDLELRSEGLITEKCSSQQPPGSKTIF
SKEKKQSSDYEELIQVLKKEQDIYTHLVKSLQESDSINNLQAELNKIFALRKQLEQDVLS
YQNLRKTLEEQISEIRRREEESFSLYSDQTSYLSICLEENNRFQVEHFSQEELKKKVSDL
IQLVKELYTDNQHLKKTIFDLSCMGFQGNGFPDRLASTEQTELLASKEDEDTIKIGEDDE
INFLSDQHLQQSNEIMKDLSKGGCKNGYLRHTESKISDCDGAHAPGCLEEGAFINLLAPL
FNEKATLLLESRPDLLKVVRELLLGQLFLTEQEVSGEHLDGKTEKTPKQKGELVHFVQTN
SFSKPHDELKLSCEAQLVKAGEVPKVGLKDASVQTVATEGDLLRFKHEATREAWEEKPIN
TALSAEHRPENLHGVPGWQAALLSLPGITNREAKKSRLPILIKPSRSLGNMYRLPATQEV
VTQLQSQILELQGELKEFKTCNKQLHQKLILAEAVMEGRPTPDKTLLNAQPPVGAAYQDS
PGEQKGIKTTSSVWRDKEMDSDQQRSYEIDSEICPPDDLASLPSCKENPEDVLSPTSVAT
YLSSKSQPSAKVSVMGTDQSESINTSNETEYLKQKIHDLETELEGYQNFIFQLQKHSQCS
EAIITVLCGTEGAQDGLSKPKNGSDGEEMTFSSLHQVRYVKHVKILGPLAPEMIDSRVLE
NLKQQLEEQEYKLQKEQNLNMQLFSEIHNLQNKFRDLSPPRYDSLVQSQARELSLQRQQI
KDGHGICVISRQHMNTMIKAFEELLQASDVDYCVAEGFQEQLNQCAELLEKLEKLFLNGK
SVGVEMNTQNELMERIEEDNLTYQHLLPESPEPSASHALSDYETSEKSFFSRDQKQDNET
EKTSVMVNSFSQDLLMEHIQEIRTLRKRLEESIKTNEKLRKQLERQGSEFVQGSTSIFAS
GSELHSSLTSEIHFLRKQNQALNAMLIKGSRDKQKENDKLRESLSRKTVSLEHLQREYAS
VKEENERLQKEGSEKERHNQQLIQEVRCSGQELSRVQEEVKLRQQLLSQNDKLLQSLRVE
LKAYEKLDEEHRRLREASGEGWKGQDPFRDLHSLLMEIQALRLQLERSIETSSTLQSRLK
EQLARGAEKAQEGALTLAVQAVSIPEVPLQPDKHDGDKYPMESDNSFDLFDSSQAVTPKS
VSETPPLSGNDTDSLSCDSGSSATSTPCVSRLVTGHHLWASKNGRHVLGLIEDYEALLKQ
ISQGQRLLAEMDIQTQEAPSSTSQELGTKGPHPAPLSKFVSSVSTAKLTLEEAYRRLKLL
WRVSLPEDGQCPLHCEQIGEMKAEVTKLHKKLFEQEKKLQNTMKLLQLSKRQEKVIFDQL
VVTHKILRKARGNLELRPGGAHPGTCSPSRPGS
Sequence length 1893
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  Reactome
    Regulation of PLK1 Activity at G2/M Transition
Loss of Nlp from mitotic centrosomes
Recruitment of mitotic centrosome proteins and complexes
Loss of proteins required for interphase microtubule organization from the centrosome
Recruitment of NuMA to mitotic centrosomes
Anchoring of the basal body to the plasma membrane
AURKA Activation by TPX2
Associated diseases Disease associations from ClinVar categorized as Causal (Pathogenic/Likely Pathogenic) or Unknown.
366
Causal Diseases associated with Pathogenic or Likely Pathogenic variants in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession
CDK5RAP2-related disorder Pathogenic rs771565845, rs374351172 RCV003412000
RCV003398664
Cervical cancer Likely pathogenic rs760836130 RCV005911190
Microcephaly Pathogenic rs1588634016 RCV001003976
Microcephaly 3, primary, autosomal recessive Pathogenic; Likely pathogenic rs774388179, rs760836130, rs2033156861, rs2131964849, rs2131327802, rs376990082, rs587783393, rs587783392, rs587783390, rs587783387, rs1238054226, rs199422126, rs387906274, rs759709467, rs869025200
View all (19 more)
RCV001331033
RCV001353052
RCV001353053
RCV001533290
RCV001780472
RCV001780473
RCV000115025
RCV000145493
RCV000145486
RCV000145479
RCV002283415
RCV000002594
RCV000002595
RCV002465445
RCV000207398
RCV000207363
RCV000194268
RCV000194025
RCV003108237
RCV003445307
RCV003987301
RCV003988732
RCV003988737
RCV004527516
RCV004547361
RCV000579386
RCV000515648
RCV001007667
RCV001095685
RCV001255836
RCV001255775
RCV000076922
RCV000076923
RCV000076924
Unknown Diseases with uncertain, conflicting, or no pathogenic evidence in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession
- no classification for the single variant rs772072816, rs752092703 -
Acute myeloid leukemia Conflicting classifications of pathogenicity; Benign rs7030969, rs374205703, rs143946953, rs773227041 RCV005887101
RCV005928546
RCV005892264
RCV005900480
Adrenocortical carcinoma, hereditary Benign; Likely benign rs77100552 RCV005887111
Cholangiocarcinoma Benign rs2490594, rs2297454 RCV005887100
RCV005905484
Associations from Text MiningDisease associations identified through Pubtator
Disease Name Relationship Type References
Adrenocortical Carcinoma Associate 36793283
Agenesis of Corpus Callosum Associate 23587236, 26197979
Alzheimer Disease Associate 29360470
Autosomal Recessive Primary Microcephaly Associate 10677332, 17764569, 17959831, 19282672, 22887808, 23587236, 26197979, 26297806, 28004182, 32677750
Azoospermia Associate 38008501
Cockayne Syndrome Associate 31980658
Cognition Disorders Associate 29360470
Colonic Neoplasms Associate 38143740
Deafness Associate 22887808
Ectodermal Dysplasia Associate 26197979