Gene
Entrez ID Entrez Gene ID - the GENE ID in NCBI Gene database.
54361
Gene name Gene Name - the full gene name approved by the HGNC.
Wnt family member 4
Gene symbol Gene Symbol - the official gene symbol approved by the HGNC.
WNT4
Synonyms (NCBI Gene) Gene synonyms aliases
SERKAL, WNT-4
Chromosome Chromosome number
1
Chromosome location Chromosomal Location - indicates the cytogenetic location of the gene or region on the chromosome.
1p36.12
Summary Summary of gene provided in NCBI Entrez Gene.
The WNT gene family consists of structurally related genes which encode secreted signaling proteins. These proteins have been implicated in oncogenesis and in several developmental processes, including regulation of cell fate and patterning during embryog
SNPs SNP information provided by dbSNP.
SNP ID Visualize variation Clinical significance Consequence
rs121908650 T>C Pathogenic Genic downstream transcript variant, missense variant, coding sequence variant
rs121908651 G>A Pathogenic Genic downstream transcript variant, missense variant, coding sequence variant
rs121908652 G>A Pathogenic Missense variant, coding sequence variant
miRNA miRNA information provided by mirtarbase database.
miRTarBase ID miRNA Experiments Reference
MIRT006385 hsa-miR-29c-3p Luciferase reporter assay 21436257
MIRT006385 hsa-miR-29c-3p Luciferase reporter assay 21436257
MIRT006385 hsa-miR-29c-3p Luciferase reporter assay 21436257
MIRT438738 hsa-miR-16-5p qRT-PCR, Western blot, YFP expression 24130753
MIRT438608 hsa-miR-24-3p Luciferase reporter assay 23027131
Transcription factors
Transcription factor Regulation Reference
EGR1 Repression 18281035
EGR1 Unknown 21436631
RUNX3 Repression 22171134
TCF4 Unknown 21436631
Gene ontology (GO) Gene ontology information of associated ontologies with gene provided by GO database.
GO ID Ontology Definition Evidence Reference
GO:0001656 Process Metanephros development IEA
GO:0001658 Process Branching involved in ureteric bud morphogenesis IEA
GO:0001822 Process Kidney development IEP 15312687
GO:0001823 Process Mesonephros development IEA
GO:0001837 Process Epithelial to mesenchymal transition IEP 12841867
Other IDs Other ids provides unique ids of gene in databases such as OMIM, HGNC, ENSEMBLE.
MIM HGNC e!Ensembl
603490 12783 ENSG00000162552
Protein
UniProt ID P56705
Protein name Protein Wnt-4
Protein function Ligand for members of the frizzled family of seven transmembrane receptors (Probable). Plays an important role in the embryonic development of the urogenital tract and the lung (PubMed:15317892, PubMed:16959810, PubMed:18179883, PubMed:18182450)
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF00110 wnt 45 351 wnt family Family
Sequence
Sequence length 351
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  KEGG   Reactome
  mTOR signaling pathway
Wnt signaling pathway
Axon guidance
Hippo signaling pathway
Signaling pathways regulating pluripotency of stem cells
Melanogenesis
Thyroid hormone signaling pathway
Cushing syndrome
Alzheimer disease
Pathways of neurodegeneration - multiple diseases
Human papillomavirus infection
Pathways in cancer
Proteoglycans in cancer
Basal cell carcinoma
Breast cancer
Hepatocellular carcinoma
Gastric cancer
  WNT ligand biogenesis and trafficking
PCP/CE pathway
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Associated diseases Disease associations categorized as Causal (pathogenic variants), Unknown (uncertain genetic evidence), or Text Mining (literature-based associations)
Causal Diseases caused by PATHOGENIC or LIKELY PATHOGENIC variants from ClinVar only
Disease merge term Disease name dbSNP ID References
Mullerian Aplasia And Hyperandrogenism mullerian aplasia and hyperandrogenism rs121908650, rs121908652, rs121908653 N/A
Serkal Syndrome serkal syndrome rs121908651 N/A
Unknown Includes: (1) ClinVar NON-pathogenic variants (Uncertain, Benign, Conflicting, VUS), (2) GenCC associations, (3) GWAS associations, (4) CBGDA evidence-based associations. NOTE: Diseases with pathogenic evidence are excluded to avoid conflicts.
Disease merge term Disease name Evidence References Source
Carpal Tunnel Syndrome Carpal tunnel syndrome N/A N/A GWAS
Colorectal Cancer Colorectal cancer N/A N/A GWAS
Endometriosis Endometriosis N/A N/A GWAS
Ovarian cancer Epithelial ovarian cancer N/A N/A GWAS
Associations from Text Mining Disease associations identified through Pubtator
Disease Name Relationship Type References
Abortion Spontaneous Associate 35300692
Acquired ichthyosis Associate 36303457
Amyotrophic Lateral Sclerosis Stimulate 30924074
Asthma Associate 29505605
Breast Neoplasms Associate 31740580, 38112643
Carcinoma Basal Cell Inhibit 11348463
Carcinoma Hepatocellular Associate 18577996
Carcinoma Lobular Associate 27650553, 38112643
Carcinoma Renal Cell Associate 33804101
Carcinoma Squamous Cell Associate 12841867, 25901368