Gene
Entrez ID Entrez Gene ID - the GENE ID in NCBI Gene database.
51176
Gene name Gene Name - the full gene name approved by the HGNC.
Lymphoid enhancer binding factor 1
Gene symbol Gene Symbol - the official gene symbol approved by the HGNC.
LEF1
Synonyms (NCBI Gene) Gene synonyms aliases
ECTD1, ECTD17, LEF-1, TCF10, TCF1ALPHA, TCF7L3
Chromosome Chromosome number
4
Chromosome location Chromosomal Location - indicates the cytogenetic location of the gene or region on the chromosome.
4q25
Summary Summary of gene provided in NCBI Entrez Gene.
This gene encodes a transcription factor belonging to a family of proteins that share homology with the high mobility group protein-1. The protein encoded by this gene can bind to a functionally important site in the T-cell receptor-alpha enhancer, thereb
miRNA miRNA information provided by mirtarbase database.
miRTarBase ID miRNA Experiments Reference
MIRT016343 hsa-miR-193b-3p Microarray 20304954
MIRT025380 hsa-miR-34a-5p Reporter assay;Proteomics 21566225
MIRT053004 hsa-miR-218-5p Luciferase reporter assay, Western blot 22766851
MIRT053005 hsa-miR-449a Luciferase reporter assay, qRT-PCR, Western blot 22769578
MIRT054053 hsa-miR-34c-3p Luciferase reporter assay, Western blot 22421157
Transcription factors
Transcription factor Regulation Reference
AES Activation 20676368
LMO2 Repression 22517897
PAX5 Activation 9545244
PITX2 Activation 17785445
ZBTB16 Unknown 19723763
Gene ontology (GO) Gene ontology information of associated ontologies with gene provided by GO database.
GO ID Ontology Definition Evidence Reference
GO:0000122 Process Negative regulation of transcription by RNA polymerase II IEA
GO:0000977 Function RNA polymerase II transcription regulatory region sequence-specific DNA binding IDA 23001182
GO:0000978 Function RNA polymerase II cis-regulatory region sequence-specific DNA binding IBA 21873635
GO:0000978 Function RNA polymerase II cis-regulatory region sequence-specific DNA binding IDA 7657162, 16344550, 17063141, 18579517, 19351848, 20128911, 20363964
GO:0000978 Function RNA polymerase II cis-regulatory region sequence-specific DNA binding ISS
Other IDs Other ids provides unique ids of gene in databases such as OMIM, HGNC, ENSEMBLE.
MIM HGNC e!Ensembl
153245 6551 ENSG00000138795
Protein
UniProt ID Q9UJU2
Protein name Lymphoid enhancer-binding factor 1 (LEF-1) (T cell-specific transcription factor 1-alpha) (TCF1-alpha)
Protein function Transcription factor that binds DNA in a sequence-specific manner (PubMed:2010090). Participates in the Wnt signaling pathway (By similarity). Activates transcription of target genes in the presence of CTNNB1 and EP300 (By similarity). PIAG anta
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF08347 CTNNB1_binding 1 213 N-terminal CTNNB1 binding Family
PF00505 HMG_box 299 367 HMG (high mobility group) box Domain
Tissue specificity TISSUE SPECIFICITY: Detected in thymus. Not detected in normal colon, but highly expressed in colon cancer biopsies and colon cancer cell lines. Expressed in several pancreatic tumors and weakly expressed in normal pancreatic tissue. Isoforms 1 and 5 are
Sequence
Sequence length 399
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  KEGG   Reactome
  Wnt signaling pathway
Hippo signaling pathway
Adherens junction
Melanogenesis
Cushing syndrome
Alcoholic liver disease
Salmonella infection
Kaposi sarcoma-associated herpesvirus infection
Pathways in cancer
Colorectal cancer
Endometrial cancer
Prostate cancer
Thyroid cancer
Basal cell carcinoma
Acute myeloid leukemia
Breast cancer
Hepatocellular carcinoma
Gastric cancer
Arrhythmogenic right ventricular cardiomyopathy
  Formation of the beta-catenin:TCF transactivating complex
Deactivation of the beta-catenin transactivating complex
Ca2+ pathway
Binding of TCF/LEF:CTNNB1 to target gene promoters
Repression of WNT target genes
Transcriptional Regulation by VENTX
RUNX3 regulates WNT signaling
Transcriptional regulation of granulopoiesis
Associated diseases Disease information provided by ClinVar, GenCC, and GWAS databases.
Causal
Disease term Disease name dbSNP ID References
Breast cancer Malignant neoplasm of breast rs587776547, rs1137887, rs137853007, rs587776650, rs80359351, rs80359714, rs121917783, rs104886456, rs121964878, rs80359874, rs80357868, rs80357508, rs387906843, rs80357569, rs80358158
View all (309 more)
27811057
Breast carcinoma Breast Carcinoma rs80359671, rs11540652, rs28934575, rs28897672, rs137886232, rs193922376, rs80357783, rs80359306, rs80359405, rs80359507, rs80359598, rs80358429, rs397507683, rs397515636, rs80359451
View all (71 more)
27811057
Colonic neoplasms Malignant tumor of colon, Colonic Neoplasms rs267607789, rs774277300, rs781222233, rs1060502734, rs1060503333, rs1339238483 21188121
Colorectal cancer Colorectal Carcinoma rs137854568, rs137854573, rs137854575, rs387906234, rs121908380, rs121908702, rs267606674, rs794729661, rs121909055, rs281865417, rs267606884, rs28934575, rs587776769, rs104893815, rs587776800
View all (467 more)
Unknown
Disease term Disease name Evidence References Source
Systemic lupus erythematosus Systemic lupus erythematosus GWAS
Lymphocytic Leukemia Lymphocytic Leukemia GWAS
Multiple Sclerosis Multiple Sclerosis GWAS
Rheumatoid arthritis Rheumatoid arthritis GWAS
Associations from Text Mining
Disease Name Relationship Type References
3 Hydroxy 3 Methylglutaryl CoA Lyase Deficiency Stimulate 32977233
3 methylcrotonyl CoA carboxylase 1 deficiency Associate 37207705
Adenocarcinoma of Lung Associate 23224985
Adenocarcinoma of Lung Stimulate 29866045
Adenoma Associate 39881334
Adenomatous Polyposis Coli Stimulate 10318916
Adenomatous Polyposis Coli Inhibit 18076571
Adenomatous Polyposis Coli Associate 31623618
Alopecia Associate 27472703
Arthritis Rheumatoid Associate 12428226, 33004899