Gene Gene information from NCBI Gene database.
Entrez ID 5095
Gene name Propionyl-CoA carboxylase subunit alpha
Gene symbol PCCA
Synonyms (NCBI Gene)
-
Chromosome 13
Chromosome location 13q32.3
Summary The protein encoded by this gene is the alpha subunit of the heterodimeric mitochondrial enzyme Propionyl-CoA carboxylase. PCCA encodes the biotin-binding region of this enzyme. Mutations in either PCCA or PCCB (encoding the beta subunit) lead to an enzym
SNPs SNP information provided by dbSNP.
81
SNP ID Visualize variation Clinical significance Consequence
rs118169528 G>T Benign, conflicting-interpretations-of-pathogenicity Intron variant, coding sequence variant, missense variant, genic downstream transcript variant, non coding transcript variant
rs121964957 A>C,G,T Likely-benign, pathogenic 5 prime UTR variant, coding sequence variant, stop gained, missense variant, synonymous variant, non coding transcript variant
rs121964958 T>A Pathogenic Intron variant, missense variant, non coding transcript variant, coding sequence variant
rs137861347 T>A,C,G Uncertain-significance, likely-pathogenic Missense variant, non coding transcript variant, initiator codon variant, coding sequence variant
rs138149179 C>T Pathogenic 5 prime UTR variant, non coding transcript variant, stop gained, coding sequence variant
miRNA miRNA information provided by mirtarbase database.
58
miRTarBase ID miRNA Experiments Reference
MIRT029589 hsa-miR-26b-5p Microarray 19088304
MIRT040742 hsa-miR-455-5p CLASH 23622248
MIRT445558 hsa-miR-486-5p PAR-CLIP 22100165
MIRT445556 hsa-miR-15b-3p PAR-CLIP 22100165
MIRT445555 hsa-miR-4326 PAR-CLIP 22100165
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
28
GO ID Ontology Definition Evidence Reference
GO:0000166 Function Nucleotide binding IEA
GO:0004658 Function Propionyl-CoA carboxylase activity IBA
GO:0004658 Function Propionyl-CoA carboxylase activity IDA 6765947
GO:0004658 Function Propionyl-CoA carboxylase activity IEA
GO:0004658 Function Propionyl-CoA carboxylase activity IMP 8434582
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
232000 8653 ENSG00000175198
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
P05165
Protein name Propionyl-CoA carboxylase alpha chain, mitochondrial (PCCase subunit alpha) (EC 6.4.1.3) (Propanoyl-CoA:carbon dioxide ligase subunit alpha)
Protein function This is one of the 2 subunits of the biotin-dependent propionyl-CoA carboxylase (PCC), a mitochondrial enzyme involved in the catabolism of odd chain fatty acids, branched-chain amino acids isoleucine, threonine, methionine, and valine and other
PDB 2CQY , 2JKU , 7YBU , 8XL3 , 8XL4 , 8XL5
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF00289 Biotin_carb_N 62 171 Biotin carboxylase, N-terminal domain Domain
PF02786 CPSase_L_D2 176 385 Carbamoyl-phosphate synthase L chain, ATP binding domain Domain
PF02785 Biotin_carb_C 397 506 Biotin carboxylase C-terminal domain Domain
PF18140 PCC_BT 525 653 Propionyl-coenzyme A carboxylase BT domain Domain
PF00364 Biotin_lipoyl 660 727 Biotin-requiring enzyme Domain
Sequence
Sequence length 728
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  KEGG  Reactome
  Valine, leucine and isoleucine degradation
Glyoxylate and dicarboxylate metabolism
Propanoate metabolism
Metabolic pathways
Carbon metabolism
  Biotin transport and metabolism
Defective HLCS causes multiple carboxylase deficiency
Propionyl-CoA catabolism
Associated diseases Disease associations from ClinVar categorized as Causal (Pathogenic/Likely Pathogenic) or Unknown.
1345
Causal Diseases associated with Pathogenic or Likely Pathogenic variants in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession
Cervical cancer Likely pathogenic; Pathogenic rs752761437 RCV005895470
Gastric cancer Likely pathogenic; Pathogenic rs1301904623 RCV005925425
Malignant tumor of urinary bladder Likely pathogenic; Pathogenic rs752761437 RCV005895469
Nonpapillary renal cell carcinoma Pathogenic rs2548445790 RCV005931539
Unknown Diseases with uncertain, conflicting, or no pathogenic evidence in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession
Adrenocortical carcinoma, hereditary Conflicting classifications of pathogenicity rs61749895 RCV005888847
Clear cell carcinoma of kidney Conflicting classifications of pathogenicity rs61749895 RCV005888849
Colorectal cancer Conflicting classifications of pathogenicity rs61749895 RCV005888851
Hepatocellular carcinoma Conflicting classifications of pathogenicity rs61749895 RCV005888844
Associations from Text MiningDisease associations identified through Pubtator
Disease Name Relationship Type References
Abnormalities Drug Induced Associate 32819290
Atrial Fibrillation Associate 34827661
Biotin deficiency Associate 15623830
Carcinoma Renal Cell Associate 30793530
Death Associate 33183246
Genetic Diseases Inborn Associate 32819290, 8434582, 9683601
Methylmalonic acidemia Associate 17966092, 31449969
Non Muscle Invasive Bladder Neoplasms Associate 28344356
Propionic Acidemia Associate 10353789, 10820128, 12757933, 15949719, 17966092, 25046265, 28925364, 31449969, 31916709, 32252659, 32819290, 32822967, 33128956, 33183246, 33725819
View all (3 more)
Propionic Acidemia Inhibit 2154743, 26740382, 3687944, 6614005, 8023851