Gene
Entrez ID Entrez Gene ID - the GENE ID in NCBI Gene database.
5095
Gene name Gene Name - the full gene name approved by the HGNC.
Propionyl-CoA carboxylase subunit alpha
Gene symbol Gene Symbol - the official gene symbol approved by the HGNC.
PCCA
Synonyms (NCBI Gene) Gene synonyms aliases
-
Chromosome Chromosome number
13
Chromosome location Chromosomal Location - indicates the cytogenetic location of the gene or region on the chromosome.
13q32.3
Summary Summary of gene provided in NCBI Entrez Gene.
The protein encoded by this gene is the alpha subunit of the heterodimeric mitochondrial enzyme Propionyl-CoA carboxylase. PCCA encodes the biotin-binding region of this enzyme. Mutations in either PCCA or PCCB (encoding the beta subunit) lead to an enzym
SNPs SNP information provided by dbSNP.
SNP ID Visualize variation Clinical significance Consequence
rs118169528 G>T Benign, conflicting-interpretations-of-pathogenicity Intron variant, coding sequence variant, missense variant, genic downstream transcript variant, non coding transcript variant
rs121964957 A>C,G,T Likely-benign, pathogenic 5 prime UTR variant, coding sequence variant, stop gained, missense variant, synonymous variant, non coding transcript variant
rs121964958 T>A Pathogenic Intron variant, missense variant, non coding transcript variant, coding sequence variant
rs137861347 T>A,C,G Uncertain-significance, likely-pathogenic Missense variant, non coding transcript variant, initiator codon variant, coding sequence variant
rs138149179 C>T Pathogenic 5 prime UTR variant, non coding transcript variant, stop gained, coding sequence variant
miRNA miRNA information provided by mirtarbase database.
miRTarBase ID miRNA Experiments Reference
MIRT029589 hsa-miR-26b-5p Microarray 19088304
MIRT040742 hsa-miR-455-5p CLASH 23622248
MIRT445558 hsa-miR-486-5p PAR-CLIP 22100165
MIRT445556 hsa-miR-15b-3p PAR-CLIP 22100165
MIRT445555 hsa-miR-4326 PAR-CLIP 22100165
Gene ontology (GO) Gene ontology information of associated ontologies with gene provided by GO database.
GO ID Ontology Definition Evidence Reference
GO:0004658 Function Propionyl-CoA carboxylase activity IBA 21873635
GO:0004658 Function Propionyl-CoA carboxylase activity IDA 6765947
GO:0004658 Function Propionyl-CoA carboxylase activity IMP 8434582
GO:0005515 Function Protein binding IPI 20725044, 32296183
GO:0005524 Function ATP binding IEA
Other IDs Other ids provides unique ids of gene in databases such as OMIM, HGNC, ENSEMBLE.
MIM HGNC e!Ensembl
232000 8653 ENSG00000175198
Protein
UniProt ID P05165
Protein name Propionyl-CoA carboxylase alpha chain, mitochondrial (PCCase subunit alpha) (EC 6.4.1.3) (Propanoyl-CoA:carbon dioxide ligase subunit alpha)
Protein function This is one of the 2 subunits of the biotin-dependent propionyl-CoA carboxylase (PCC), a mitochondrial enzyme involved in the catabolism of odd chain fatty acids, branched-chain amino acids isoleucine, threonine, methionine, and valine and other
PDB 2CQY , 2JKU , 7YBU , 8XL3 , 8XL4 , 8XL5
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF00289 Biotin_carb_N 62 171 Biotin carboxylase, N-terminal domain Domain
PF02786 CPSase_L_D2 176 385 Carbamoyl-phosphate synthase L chain, ATP binding domain Domain
PF02785 Biotin_carb_C 397 506 Biotin carboxylase C-terminal domain Domain
PF18140 PCC_BT 525 653 Propionyl-coenzyme A carboxylase BT domain Domain
PF00364 Biotin_lipoyl 660 727 Biotin-requiring enzyme Domain
Sequence
Sequence length 728
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  KEGG   Reactome
  Valine, leucine and isoleucine degradation
Glyoxylate and dicarboxylate metabolism
Propanoate metabolism
Metabolic pathways
Carbon metabolism
  Biotin transport and metabolism
Defective HLCS causes multiple carboxylase deficiency
Propionyl-CoA catabolism
Associated diseases Disease information provided by ClinVar, GenCC, and GWAS databases.
Causal
Disease term Disease name dbSNP ID References
Anemia Anemia rs118204044, rs118204045, rs118204046, rs121918330, rs869320719, rs869312029, rs121918332, rs869320724, rs767094129, rs786205058, rs786205059, rs137853119, rs137853120, rs137853121, rs1384933966
View all (89 more)
Cardiomyopathy Cardiomyopathies, Cardiomyopathy, Familial Idiopathic rs267607003, rs267607002, rs267607004, rs63750743, rs121908333, rs121908334, rs104894655, rs121434420, rs121434421, rs193922674, rs111517471, rs121908987, rs193922384, rs121909374, rs121909377
View all (900 more)
27604308
Developmental delay Global developmental delay rs28941770, rs199469464, rs281865469, rs143747297, rs398123009, rs587777428, rs786205133, rs606231459, rs797044854, rs797045027, rs864309504, rs878853160, rs886039902, rs886042046, rs886041291
View all (32 more)
Encephalopathy Acute encephalopathy rs118204095, rs118204096, rs118204101, rs118204109, rs118204119, rs28939378, rs121908531, rs28936674, rs80359829, rs80359828, rs80359816, rs80359814, rs2124448824, rs121909739, rs121909740
View all (107 more)
Unknown
Disease term Disease name Evidence References Source
Hyperglycinuria HYPERGLYCINURIA (disorder) ClinVar
Pancreatitis Pancreatitis ClinVar
Atrial Fibrillation Atrial Fibrillation GWAS
Myopia Myopia GWAS
Associations from Text Mining
Disease Name Relationship Type References
Abnormalities Drug Induced Associate 32819290
Atrial Fibrillation Associate 34827661
Biotin deficiency Associate 15623830
Carcinoma Renal Cell Associate 30793530
Death Associate 33183246
Genetic Diseases Inborn Associate 32819290, 8434582, 9683601
Methylmalonic acidemia Associate 17966092, 31449969
Non Muscle Invasive Bladder Neoplasms Associate 28344356
Propionic Acidemia Associate 10353789, 10820128, 12757933, 15949719, 17966092, 25046265, 28925364, 31449969, 31916709, 32252659, 32819290, 32822967, 33128956, 33183246, 33725819
View all (3 more)
Propionic Acidemia Inhibit 2154743, 26740382, 3687944, 6614005, 8023851