Gene
Entrez ID Entrez Gene ID - the GENE ID in NCBI Gene database.
5077
Gene name Gene Name - the full gene name approved by the HGNC.
Paired box 3
Gene symbol Gene Symbol - the official gene symbol approved by the HGNC.
PAX3
Synonyms (NCBI Gene) Gene synonyms aliases
CDHS, HUP2, PAX-3, WS1, WS3
Disease Acronyms (UniProt) Disease acronyms from UniProt database
CDHS, WS1, WS3
Chromosome Chromosome number
2
Chromosome location Chromosomal Location - indicates the cytogenetic location of the gene or region on the chromosome.
2q36.1
Summary Summary of gene provided in NCBI Entrez Gene.
This gene is a member of the paired box (PAX) family of transcription factors. Members of the PAX family typically contain a paired box domain and a paired-type homeodomain. These genes play critical roles during fetal development. Mutations in paired box
SNPs SNP information provided by dbSNP.
SNP ID Visualize variation Clinical significance Consequence
rs116473352 C>G Conflicting-interpretations-of-pathogenicity, benign, likely-benign Coding sequence variant, missense variant
rs147111779 G>A,C Likely-benign, pathogenic Synonymous variant, coding sequence variant, genic downstream transcript variant, stop gained, intron variant
rs369886550 G>A,C,T Likely-pathogenic Stop gained, missense variant, intron variant, genic downstream transcript variant, coding sequence variant
rs772241382 G>A Pathogenic Genic downstream transcript variant, coding sequence variant, stop gained
rs876657717 C>T Pathogenic Genic downstream transcript variant, missense variant, coding sequence variant
miRNA miRNA information provided by mirtarbase database.
miRTarBase ID miRNA Experiments Reference
MIRT004670 hsa-miR-1-3p ChIP-seq, Immunoblot, Luciferase reporter assay, qRT-PCR, Western blot 20956382
MIRT004670 hsa-miR-1-3p ChIP-seq, Immunoblot, Luciferase reporter assay, qRT-PCR, Western blot 20956382
MIRT004671 hsa-miR-206 ChIP-seq, Immunoblot, Luciferase reporter assay, qRT-PCR, Western blot 20956382
MIRT004671 hsa-miR-206 ChIP-seq, Immunoblot, Luciferase reporter assay, qRT-PCR, Western blot 20956382
MIRT006521 hsa-miR-27a-3p Luciferase reporter assay 19666532
Transcription factors
Transcription factor Regulation Reference
POU3F2 Unknown 22290434
STAT3 Repression 19074888
TEAD1 Unknown 21687713
Gene ontology (GO) Gene ontology information of associated ontologies with gene provided by GO database.
GO ID Ontology Definition Evidence Reference
GO:0000785 Component Chromatin ISA
GO:0000978 Function RNA polymerase II cis-regulatory region sequence-specific DNA binding IBA 21873635
GO:0000981 Function DNA-binding transcription factor activity, RNA polymerase II-specific IBA 21873635
GO:0000981 Function DNA-binding transcription factor activity, RNA polymerase II-specific ISA
GO:0003700 Function DNA-binding transcription factor activity TAS 9500554
Other IDs Other ids provides unique ids of gene in databases such as OMIM, HGNC, ENSEMBLE.
MIM HGNC e!Ensembl
606597 8617 ENSG00000135903
Protein
UniProt ID P23760
Protein name Paired box protein Pax-3 (HuP2)
Protein function Transcription factor that may regulate cell proliferation, migration and apoptosis. Involved in neural development and myogenesis. Transcriptional activator of MITF, acting synergistically with SOX10 (PubMed:21965087). {ECO:0000269|PubMed:169511
PDB 3CMY
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF00292 PAX 34 159 Domain
PF00046 Homeodomain 220 276 Homeodomain Domain
PF12360 Pax7 347 391 Paired box protein 7 Family
Sequence
MTTLAGAVPRMMRPGPGQNYPRSGFPLEVSTPLGQGRVNQLGGVFINGRPLPNHIRHKIV
EMAHHGIRPCVISRQLRVSHGCVSKILCRYQETGSIRPGAIGGSKPKQVTTPDVEKKIEE
YKRENPGMFSWEIRDKLLKDAVCDRNTVPSVSSISRILR
SKFGKGEEEEADLERKEAEES
EKKAKHSIDGILSERASAPQSDEGSDIDSEPDLPLKRKQRRSRTTFTAEQLEELERAFER
THYPDIYTREELAQRAKLTEARVQVWFSNRRARWRK
QAGANQLMAFNHLIPGGFPPTAMP
TLPTYQLSETSYQPTSIPQAVSDPSSTVHRPQPLPPSTVHQSTIPSNPDSSSAYCLPSTR
HGFSSYTDSFVPPSGPSNPMNPTIGNGLSPQ
VMGLLTNHGGVPHQPQTDYALSPLTGGLE
PTTTVSASCSQRLDHMKSLDSLPTSQSYCPPTYSTTGYSMDPVTGYQYGQYGQSKPWTF
Sequence length 479
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  KEGG   Reactome
  Transcriptional misregulation in cancer   HATs acetylate histones
Associated diseases Disease information provided by ClinVar, GenCC, and GWAS databases.
Causal
Disease term Disease name dbSNP ID References
Anencephaly Iniencephaly, Cranioschisis, Exencephaly rs773607884 3293260, 12854658, 12739027, 7556916
Atrial septal defect Atrial Septal Defects rs137852951, rs137852953, rs137852955, rs267607106, rs104893900, rs104893901, rs104893903, rs606231358, rs606231359, rs137852683, rs606231360, rs104893907, rs104894073, rs1585703301, rs104894074
View all (25 more)
Brachydactyly Brachydactyly rs121908949, rs28937580, rs121909082, rs104894122, rs863223289, rs863223290, rs104894121, rs1587657302, rs863223292, rs74315386, rs74315387, rs28936397, rs753691079, rs121909348, rs121917852
View all (22 more)
Craniofacial-deafness-hand syndrome Craniofacial-deafness-hand syndrome rs104893652
Unknown
Disease term Disease name Evidence References Source
Ptosis Blepharoptosis, Ptosis ClinVar
Waardenburg Syndrome Waardenburg syndrome type 3, Waardenburg syndrome GenCC
Insomnia Insomnia GWAS
Associations from Text Mining
Disease Name Relationship Type References
Alzheimer Disease Associate 25114068
Arm Injuries Associate 34389744
Astrocytoma Associate 26497896
Ataxia Telangiectasia Associate 35879366
Autistic Disorder Associate 12070244
Breast Neoplasms Associate 28747748
Calcinosis Cutis Associate 22089931
Carcinogenesis Associate 15184910, 26355893, 33627785
Carcinoma Ovarian Epithelial Associate 31823759
Chromosome Aberrations Associate 7942851