Gene
Entrez ID Entrez Gene ID - the GENE ID in NCBI Gene database.
4952
Gene name Gene Name - the full gene name approved by the HGNC.
OCRL inositol polyphosphate-5-phosphatase
Gene symbol Gene Symbol - the official gene symbol approved by the HGNC.
OCRL
Synonyms (NCBI Gene) Gene synonyms aliases
DENT2, Dent-2, INPP5F, LOCR, NPHL2, OCRL-1, OCRL1
Disease Acronyms (UniProt) Disease acronyms from UniProt database
DENT2
Chromosome Chromosome number
X
Chromosome location Chromosomal Location - indicates the cytogenetic location of the gene or region on the chromosome.
Xq26.1
Summary Summary of gene provided in NCBI Entrez Gene.
This gene encodes an inositol polyphosphate 5-phosphatase. This protein is involved in regulating membrane trafficking and is located in numerous subcellular locations including the trans-Golgi network, clathrin-coated vesicles and, endosomes and the plas
SNPs SNP information provided by dbSNP.
SNP ID Visualize variation Clinical significance Consequence
rs137853260 G>A Pathogenic Coding sequence variant, missense variant
rs137853261 C>G Pathogenic Coding sequence variant, missense variant
rs137853262 A>G Pathogenic Coding sequence variant, missense variant
rs137853263 C>A,T Not-provided, likely-pathogenic, pathogenic-likely-pathogenic Coding sequence variant, missense variant
rs137853846 C>T Likely-pathogenic Coding sequence variant, missense variant
miRNA miRNA information provided by mirtarbase database.
miRTarBase ID miRNA Experiments Reference
MIRT047730 hsa-miR-10a-5p CLASH 23622248
MIRT044664 hsa-miR-320a CLASH 23622248
MIRT043931 hsa-miR-378a-3p CLASH 23622248
MIRT042349 hsa-miR-484 CLASH 23622248
MIRT326301 hsa-miR-15a-5p HITS-CLIP 23313552
Gene ontology (GO) Gene ontology information of associated ontologies with gene provided by GO database.
GO ID Ontology Definition Evidence Reference
GO:0001750 Component Photoreceptor outer segment IDA 22543976
GO:0004439 Function Phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity IBA 21873635
GO:0004439 Function Phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity TAS
GO:0004445 Function Inositol-polyphosphate 5-phosphatase activity IEA
GO:0005096 Function GTPase activator activity IDA 12915445
Other IDs Other ids provides unique ids of gene in databases such as OMIM, HGNC, ENSEMBLE.
MIM HGNC e!Ensembl
300535 8108 ENSG00000122126
Protein
UniProt ID Q01968
Protein name Inositol polyphosphate 5-phosphatase OCRL (EC 3.1.3.36) (EC 3.1.3.56) (Inositol polyphosphate 5-phosphatase OCRL-1) (OCRL-1) (Lowe oculocerebrorenal syndrome protein) (Phosphatidylinositol 3,4,5-triphosphate 5-phosphatase) (EC 3.1.3.86)
Protein function Catalyzes the hydrolysis of the 5-position phosphate of phosphatidylinositol 4,5-bisphosphate (PtdIns(4,5)P2) and phosphatidylinositol-3,4,5-bisphosphate (PtdIns(3,4,5)P3), with the greatest catalytic activity towards PtdIns(4,5)P2 (PubMed:10764
PDB 2KIE , 2QV2 , 3QBT , 3QIS , 4CMN
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF16726 OCRL_clath_bd 18 118 Inositol polyphosphate 5-phosphatase clathrin binding domain Domain
PF03372 Exo_endo_phos 245 524 Endonuclease/Exonuclease/phosphatase family Domain
PF00620 RhoGAP 735 878 RhoGAP domain Domain
Tissue specificity TISSUE SPECIFICITY: Brain, skeletal muscle, heart, kidney, lung, placenta and fibroblasts. Expressed in the retina and the retinal pigment epithelium. {ECO:0000269|PubMed:22543976}.
Sequence
MEPPLPVGAQPLATVEGMEMKGPLREPCALTLAQRNGQYELIIQLHEKEQHVQDIIPINS
HFRCVQEAEETLLIDIASNSGCKIRVQGDWIRERRFEIPDEEHCLKFLSAVLAAQKAQ
SQ
LLVPEQKDSSSWYQKLDTKDKPSVFSGLLGFEDNFSSMNLDKKINSQNQPTGIHREPPPP
PFSVNKMLPREKEASNKEQPKVTNTMRKLFVPNTQSGQREGLIKHILAKREKEYVNIQTF
RFFVGTWNVNGQSPDSGLEPWLNCDPNPPDIYCIGFQELDLSTEAFFYFESVKEQEWSMA
VERGLHSKAKYKKVQLVRLVGMMLLIFARKDQCRYIRDIATETVGTGIMGKMGNKGGVAV
RFVFHNTTFCIVNSHLAAHVEDFERRNQDYKDICARMSFVVPNQTLPQLNIMKHEVVIWL
GDLNYRLCMPDANEVKSLINKKDLQRLLKFDQLNIQRTQKKAFVDFNEGEIKFIPTYKYD
SKTDRWDSSGKCRVPAWCDRILWRGTNVNQLNYRSHMELKTSDH
KPVSALFHIGVKVVDE
RRYRKVFEDSVRIMDRMENDFLPSLELSRREFVFENVKFRQLQKEKFQISNNGQVPCHFS
FIPKLNDSQYCKPWLRAEPFEGYLEPNETVDISLDVYVSKDSVTILNSGEDKIEDILVLH
LDRGKDYFLTISGNYLPSCFGTSLEALCRMKRPIREVPVTKLIDLEEDSFLEKEKSLLQM
VPLDEGASERPLQVPKEIWLLVDHLFKYACHQEDLFQTPGMQEELQQIIDCLDTSIPETI
PGSNHSVAEALLIFLEALPEPVICYELYQRCLDSAYDPRICRQVISQLPRCHRNVFRYLM
AFLRELLKFSEYNSVNANMIATLFTSLLLRPPPNLMAR
QTPSDRQRAIQFLLGFLLGSEE
D
Sequence length 901
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  KEGG   Reactome
  Inositol phosphate metabolism
Metabolic pathways
Phosphatidylinositol signaling system
  Synthesis of PIPs at the plasma membrane
Synthesis of PIPs at the Golgi membrane
Synthesis of IP2, IP, and Ins in the cytosol
Synthesis of IP3 and IP4 in the cytosol
Rho GTPase cycle
Golgi Associated Vesicle Biogenesis
Clathrin-mediated endocytosis
Associated diseases Disease information provided by ClinVar, GenCC, and GWAS databases.
Causal
Disease term Disease name dbSNP ID References
Anemia Anemia rs118204044, rs118204045, rs118204046, rs121918330, rs869320719, rs869312029, rs121918332, rs869320724, rs767094129, rs786205058, rs786205059, rs137853119, rs137853120, rs137853121, rs1384933966
View all (89 more)
Arthritis Arthritis rs1594890601, rs1594882933, rs184370809, rs776489319, rs1594883470
Attention deficit hyperactivity disorder Attention deficit hyperactivity disorder rs786205019
Azoospermia Azoospermia rs200969445, rs144567652, rs765353898
Unknown
Disease term Disease name Evidence References Source
Mental depression Depressive disorder ClinVar
Otitis media Chronic otitis media ClinVar
Associations from Text Mining
Disease Name Relationship Type References
Abnormalities Drug Induced Associate 31484968
Acidosis Renal Tubular Associate 15627218
Autism Spectrum Disorder Associate 30147856, 32393163
Autistic Disorder Associate 22965764
Bartter Syndrome Associate 35549682
Biliary Atresia Associate 34750413
Bipolar Disorder Associate 30147856
Brain Diseases Associate 35023542
Cataract Associate 15627218, 22907655, 28473699, 30713423, 37189363, 9199559
Congenital Abnormalities Associate 29444177