Gene Gene information from NCBI Gene database.
Entrez ID 4854
Gene name Notch receptor 3
Gene symbol NOTCH3
Synonyms (NCBI Gene)
CADASILCADASIL1CASILIMF2LMNS
Chromosome 19
Chromosome location 19p13.12
Summary This gene encodes the third discovered human homologue of the Drosophilia melanogaster type I membrane protein notch. In Drosophilia, notch interaction with its cell-bound ligands (delta, serrate) establishes an intercellular signalling pathway that plays
SNPs SNP information provided by dbSNP.
101
SNP ID Visualize variation Clinical significance Consequence
rs28933696 G>A Likely-pathogenic, pathogenic Coding sequence variant, missense variant
rs28933697 G>A Pathogenic Coding sequence variant, missense variant
rs28933698 A>G Pathogenic Coding sequence variant, missense variant
rs28937321 C>A Pathogenic Coding sequence variant, missense variant
rs75068032 G>A,C,T Pathogenic Coding sequence variant, missense variant
miRNA miRNA information provided by mirtarbase database.
210
miRTarBase ID miRNA Experiments Reference
MIRT000665 hsa-miR-206 Review 19935707
MIRT000665 hsa-miR-206 Luciferase reporter assayqRT-PCRWestern blot 19723635
MIRT006550 hsa-miR-1-3p ImmunoblotImmunofluorescenceImmunoprecipitaionLuciferase reporter assayMicroarrayqRT-PCRWestern blot 22210864
MIRT006550 hsa-miR-1-3p ImmunoblotImmunofluorescenceImmunoprecipitaionLuciferase reporter assayMicroarrayqRT-PCRWestern blot 22210864
MIRT007016 hsa-miR-150-5p Luciferase reporter assay 21551231
Transcription factors Transcription factors information provided by TRRUST V2 database.
1
Transcription factor Regulation Reference
MSX1 Activation 18201699
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
47
GO ID Ontology Definition Evidence Reference
GO:0000122 Process Negative regulation of transcription by RNA polymerase II IEA
GO:0000139 Component Golgi membrane IEA
GO:0000139 Component Golgi membrane TAS
GO:0005509 Function Calcium ion binding IEA
GO:0005515 Function Protein binding IPI 11006133, 11101851, 17292860, 32296183
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
600276 7883 ENSG00000074181
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
Q9UM47
Protein name Neurogenic locus notch homolog protein 3 (Notch 3) [Cleaved into: Notch 3 extracellular truncation; Notch 3 intracellular domain]
Protein function Functions as a receptor for membrane-bound ligands Jagged1, Jagged2 and Delta1 to regulate cell-fate determination (PubMed:15350543). Upon ligand activation through the released notch intracellular domain (NICD) it forms a transcriptional activa
PDB 4ZLP , 5CZV , 5CZX , 6WQU , 6XSW , 8OS0
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF00008 EGF 43 75 EGF-like domain Domain
PF00008 EGF 123 154 EGF-like domain Domain
PF07645 EGF_CA 158 201 Calcium-binding EGF domain Domain
PF00008 EGF 201 232 EGF-like domain Domain
PF00008 EGF 240 270 EGF-like domain Domain
PF07645 EGF_CA 274 315 Calcium-binding EGF domain Domain
PF00008 EGF 317 348 EGF-like domain Domain
PF00008 EGF 355 385 EGF-like domain Domain
PF07645 EGF_CA 391 430 Calcium-binding EGF domain Domain
PF07645 EGF_CA 431 467 Calcium-binding EGF domain Domain
PF00008 EGF 473 503 EGF-like domain Domain
PF00008 EGF 511 541 EGF-like domain Domain
PF00008 EGF 549 578 EGF-like domain Domain
PF00008 EGF 586 616 EGF-like domain Domain
PF12661 hEGF 666 686 Human growth factor-like EGF Domain
PF12661 hEGF 704 724 Human growth factor-like EGF Domain
PF00008 EGF 775 806 EGF-like domain Domain
PF07645 EGF_CA 810 848 Calcium-binding EGF domain Domain
PF00008 EGF 853 883 EGF-like domain Domain
PF12661 hEGF 896 916 Human growth factor-like EGF Domain
PF00008 EGF 926 958 EGF-like domain Domain
PF00008 EGF 1004 1032 EGF-like domain Domain
PF00008 EGF 1051 1080 EGF-like domain Domain
PF00008 EGF 1088 1118 EGF-like domain Domain
PF00008 EGF 1126 1155 EGF-like domain Domain
PF00008 EGF 1164 1201 EGF-like domain Domain
PF00008 EGF 1339 1371 EGF-like domain Domain
PF00066 Notch 1384 1418 LNR domain Domain
PF00066 Notch 1425 1459 LNR domain Domain
PF00066 Notch 1464 1501 LNR domain Domain
PF06816 NOD 1505 1560 NOTCH protein Family
PF07684 NODP 1577 1637 NOTCH protein Family
PF12796 Ank_2 1811 1905 Ankyrin repeats (3 copies) Repeat
PF12796 Ank_2 1910 2002 Ankyrin repeats (3 copies) Repeat
PF11936 DUF3454 2211 2274 Domain of unknown function (DUF3454) Family
Tissue specificity TISSUE SPECIFICITY: Ubiquitously expressed in fetal and adult tissues.
Sequence
MGPGARGRRRRRRPMSPPPPPPPVRALPLLLLLAGPGAAAPPCLDGSPCANGGRCTQLPS
REAACLCPPGWVGER
CQLEDPCHSGPCAGRGVCQSSVVAGTARFSCRCPRGFRGPDCSLP
DPCLSSPCAHGARCSVGPDGRFLCSCPPGYQGRSCRSDVDECRVGEPCRHGGTCLNTPGS
FRCQCPAGYTGPLCENPAVP
CAPSPCRNGGTCRQSGDLTYDCACLPGFEGQNCEVNVDDC
PGHRCLNGGTCVDGVNTYNCQCPPEWTGQF
CTEDVDECQLQPNACHNGGTCFNTLGGHSC
VCVNGWTGESCSQNI
DDCATAVCFHGATCHDRVASFYCACPMGKTGLLCHLDDACVSNPC
HEDAICDTNPVNGRAICTCPPGFTG
GACDQDVDECSIGANPCEHLGRCVNTQGSFLCQCG
RGYTGPRCET
DVNECLSGPCRNQATCLDRIGQFTCICMAGFTGTYCEVDIDECQSSPCVN
GGVCKDRVNGFSCTCPSGFSGST
CQLDVDECASTPCRNGAKCVDQPDGYECRCAEGFEGT
L
CDRNVDDCSPDPCHHGRCVDGIASFSCACAPGYTGTRCESQVDECRSQPCRHGGKCLDL
VDKYLCRCPSGTTGVN
CEVNIDDCASNPCTFGVCRDGINRYDCVCQPGFTGPLCNVEINE
CASSPCGEGGSCVDGENGFRCLCPPGSLPPLCLPPSHPCAHEPCSHGICYDAPGGFRCVC
EPGW
SGPRCSQSLARDACESQPCRAGGTCSSDGMGFHCTCPPGVQGRQCELLSPCTPNPC
EHGGRCESAPGQLPVCSCPQGWQGPR
CQQDVDECAGPAPCGPHGICTNLAGSFSCTCHGG
YTGPSCDQ
DINDCDPNPCLNGGSCQDGVGSFSCSCLPGFAGPRCARDVDECLSNPCGPGT
CTDHVASFTCTCPPGY
GGFHCEQDLPDCSPSSCFNGGTCVDGVNSFSCLCRPGYTGAHCQ
HEADPCLSRPCLHGGVCSAAHPGFRCTCLESFTGPQCQTLVDWCSRQPCQNGGRCVQTGA
YCLCPPGWSGRL
CDIRSLPCREAAAQIGVRLEQLCQAGGQCVDEDSSHYCVCPEGRTGSH
CEQEVDPCLAQPCQHGGTCRGYMGGYMCECLPGYNGDNCEDDVDECASQPCQHGGSCIDL
VARYLCSCPPGTLGV
LCEINEDDCGPGPPLDSGPRCLHNGTCVDLVGGFRCTCPPGYTGL
R
CEADINECRSGACHAAHTRDCLQDPGGGFRCLCHAGFSGPRCQTVLSPCESQPCQHGGQ
CRPSPGPGGGLTFTCHCAQPFWGPRCERVARSCRELQCPVGVPCQQTPRGPRCACPPGLS
GPSCRSFPGSPPGASNASCAAAPCLHGGSCRPAPLAPFFRCACAQGWTGPRCEAPAAAPE
VSEEPRCPRAACQAKRGDQRCDRECNSPGCGWDGGDCSLSVGDPWRQCEALQCWRLFNNS
RCDPACSSPACLYDNFDCH
AGGRERTCNPVYEKYCADHFADGRCDQGCNTEECGWDGLDC
A
SEVPALLARGVLVLTVLLPPEELLRSSADFLQRLSAILRTSLRFRLDAHGQAMVFPYHR
PSPGSEPRARRELAPEVIGSVVMLEIDNRLCLQSPENDHCFPDAQSAADYLGALSAVERL
DFPYPLRDVRGEPLEPP
EPSVPLLPLLVAGAVLLLVILVLGVMVARRKREHSTLWFPEGF
SLHKDVASGHKGRREPVGQDALGMKNMAKGESLMGEVATDWMDTECPEAKRLKVEEPGMG
AEEAVDCRQWTQHHLVAADIRVAPAMALTPPQGDADADGMDVNVRGPDGFTPLMLASFCG
GALEPMPTEEDEADDTSASIISDLICQGAQLGARTDRTGETALHLAARYARADAAKRLLD
AGADTNAQDHSGRTPLHTAVTADAQGVFQILIRNRSTDLDARMAD
GSTALILAARLAVEG
MVEELIASHADVNAVDELGKSALHWAAAVNNVEATLALLKNGANKDMQDSKEETPLFLAA
REGSYEAAKLLLDHFANREITD
HLDRLPRDVAQERLHQDIVRLLDQPSGPRSPPGPHGLG
PLLCPPGAFLPGLKAAQSGSKKSRRPPGKAGLGPQGPRGRGKKLTLACPGPLADSSVTLS
PVDSLDSPRPFGGPPASPGGFPLEGPYAAATATAVSLAQLGGPGRAGLGRQPPGGCVLSL
GLLNPVAVPLDWARLPPPAPPGPSFLLPLAPGPQLLNPGTPVSPQERPPPYLAVPGHGEE
YPAAGAHSSPPKARFLRVPSEHPYLTPSPESPEHWASPSPPSLSDWSESTPSPA
TATGAM
ATTTGALPAQPLPLSVPSSLAQAQTQLGPQPEVTPKRQVLA
Sequence length 2321
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  KEGG  Reactome
  Endocrine resistance
Notch signaling pathway
Apelin signaling pathway
Th1 and Th2 cell differentiation
Thyroid hormone signaling pathway
Human papillomavirus infection
Pathways in cancer
MicroRNAs in cancer
Breast cancer
  Pre-NOTCH Transcription and Translation
Pre-NOTCH Processing in Golgi
Notch-HLH transcription pathway
Defective LFNG causes SCDO3
NOTCH3 Activation and Transmission of Signal to the Nucleus
NOTCH3 Intracellular Domain Regulates Transcription
Noncanonical activation of NOTCH3
Associated diseases Disease associations from ClinVar categorized as Causal (Pathogenic/Likely Pathogenic) or Unknown.
948
Causal Diseases associated with Pathogenic or Likely Pathogenic variants in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession
Abnormal brain morphology Likely pathogenic rs1555728965 RCV000626689
Abnormal cerebral white matter morphology Likely pathogenic rs1599391938 RCV001003545
Adams-Oliver syndrome 5 Likely pathogenic; Pathogenic rs1555730176 RCV005863182
Adult onset neurodegenerative disorder Pathogenic rs28933696 RCV005859325
Unknown Diseases with uncertain, conflicting, or no pathogenic evidence in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession
Breast ductal adenocarcinoma Uncertain significance rs869025230 RCV000207300
Cerebral arteriopathy with subcortical infarcts and leukoencephalopathy 2 Conflicting classifications of pathogenicity rs753801611 RCV001293043
Cerebral cavernous malformation Conflicting classifications of pathogenicity rs752995216 RCV001728074
Cerebral small vessel disease Benign; Likely benign rs114207045 RCV005627356
Associations from Text MiningDisease associations identified through Pubtator
Disease Name Relationship Type References
Abnormalities Drug Induced Associate 32732295
Acute Disease Associate 25959358
Adenocarcinoma Associate 26261665, 26634853, 27196489, 28061457
Adenocarcinoma Mucinous Associate 35900231
Adenocarcinoma of Lung Associate 26977885, 27196489, 35656882, 38335304
Adenocarcinoma of Lung Stimulate 30732676
Adenomatoid Tumor Associate 26261665
Agenesis of Corpus Callosum Associate 11757773, 11846209
AIDS Arteritis Central Nervous System Associate 10712431, 22082899, 25953367, 31441874, 32106772, 32552418, 33161844, 33712516, 33942994, 35862191, 38105268, 40018934, 40265482
Airway Remodeling Associate 34769246