Gene Details | GeDiPNet - Complete Gene Info, Disease Associations & Pathways

Gene Gene SNPs miRNA Transcription factors Gene ontology Other IDs Protein Pathways Associated diseases
Entrez ID Entrez Gene ID - the GENE ID in NCBI Gene database.	4688
Gene name Gene Name - the full gene name approved by the HGNC.	Neutrophil cytosolic factor 2
Gene symbol Gene Symbol - the official gene symbol approved by the HGNC.	NCF2
Synonyms (NCBI Gene) Gene synonyms aliases	NCF-2, NOXA2, P67-PHOX, P67PHOX
Chromosome Chromosome number	1
Chromosome location Chromosomal Location - indicates the cytogenetic location of the gene or region on the chromosome.	1q25.3
Summary Summary of gene provided in NCBI Entrez Gene.	This gene encodes neutrophil cytosolic factor 2, the 67-kilodalton cytosolic subunit of the multi-protein NADPH oxidase complex found in neutrophils. This oxidase produces a burst of superoxide which is delivered to the lumen of the neutrophil phagosome.

Show/Hide all(24)

SNP ID	Visualize variation	Clinical significance	Consequence
rs115365142	C>T	Conflicting-interpretations-of-pathogenicity, uncertain-significance, likely-benign	Missense variant, intron variant, coding sequence variant
rs119103274	G>A	Pathogenic	Missense variant, intron variant, coding sequence variant
rs119103275	C>T	Pathogenic	Missense variant, coding sequence variant
rs119103276	G>A,C,T	Pathogenic, benign	Stop gained, missense variant, coding sequence variant
rs137854508	G>A	Likely-pathogenic	Missense variant, intron variant, coding sequence variant
rs137878529	T>C,G	Pathogenic	Missense variant, intron variant, coding sequence variant
rs143889676	G>A	Conflicting-interpretations-of-pathogenicity	Coding sequence variant, synonymous variant
rs147415774	C>T	Conflicting-interpretations-of-pathogenicity	Missense variant, coding sequence variant
rs267606912	T>A	Pathogenic	Intron variant, missense variant, coding sequence variant
rs374402066	G>A	Pathogenic	Coding sequence variant, stop gained
rs755796920	G>A,T	Pathogenic	Missense variant, intron variant, coding sequence variant, stop gained
rs766745748	G>A	Likely-pathogenic	Stop gained, intron variant, coding sequence variant
rs777621636	G>-	Pathogenic	Coding sequence variant, frameshift variant
rs796065030	->CT	Pathogenic	Coding sequence variant, intron variant, frameshift variant
rs796065031	CTTAG>-	Pathogenic	Coding sequence variant, frameshift variant
rs796065032	C>G,T	Pathogenic	Splice donor variant
rs796065033	TTCTTGTCC>-	Pathogenic, likely-pathogenic	Coding sequence variant, inframe deletion
rs990043411	C>T	Pathogenic	Splice donor variant
rs1064794299	TG>-	Pathogenic	Coding sequence variant, frameshift variant
rs1290169467	C>-	Pathogenic	Coding sequence variant, frameshift variant
rs1472146831	TCCTT>-	Pathogenic	Coding sequence variant, stop gained
rs1558092897	C>G	Likely-pathogenic	Splice donor variant
rs1558098982	T>-	Pathogenic	Intron variant, coding sequence variant, frameshift variant
rs1572151178	G>A	Pathogenic	Coding sequence variant, stop gained

Show/Hide all(11)

miRTarBase ID	miRNA	Experiments	Reference
MIRT022884	hsa-miR-124-3p	Microarray	18668037
MIRT2578685	hsa-miR-136	CLIP-seq
MIRT2578686	hsa-miR-3622a-3p	CLIP-seq
MIRT2578687	hsa-miR-3622b-3p	CLIP-seq
MIRT2578688	hsa-miR-4691-5p	CLIP-seq
MIRT2578689	hsa-miR-4764-3p	CLIP-seq
MIRT2578685	hsa-miR-136	CLIP-seq
MIRT2578686	hsa-miR-3622a-3p	CLIP-seq
MIRT2578687	hsa-miR-3622b-3p	CLIP-seq
MIRT2578688	hsa-miR-4691-5p	CLIP-seq
MIRT2578689	hsa-miR-4764-3p	CLIP-seq

Transcription factors

Show/Hide all(6)

Transcription factor	Regulation	Reference
IRF1	Activation	10570299
IRF8	Activation	10570299
MED15	Unknown	20025940
PLAGL2	Activation	17462995;20025940
SPI1	Activation	10570299
SPI1	Unknown	20025940

Show/Hide all(26)

GO ID	Ontology	Definition	Evidence	Reference
GO:0001669	Component	Acrosomal vesicle	IEA
GO:0002479	Process	Antigen processing and presentation of exogenous peptide antigen via MHC class I, TAP-dependent	TAS
GO:0005515	Function	Protein binding	IPI	7938008, 8280052, 11483497, 11733522, 12887891, 15591124, 15657040, 16297854, 16782902, 19129478, 21516116, 22203994, 25416956, 25910212, 26871637, 31515488, 32296183
GO:0005829	Component	Cytosol	IBA	21873635
GO:0005829	Component	Cytosol	IDA	8280052
GO:0005829	Component	Cytosol	TAS
GO:0006801	Process	Superoxide metabolic process	TAS	7938008
GO:0006909	Process	Phagocytosis	IEA
GO:0006968	Process	Cellular defense response	TAS	1692159
GO:0008022	Function	Protein C-terminus binding	IPI	9365277
GO:0009055	Function	Electron transfer activity	TAS	1692159
GO:0016020	Component	Membrane	IDA	8280052
GO:0016175	Function	Superoxide-generating NAD(P)H oxidase activity	IGI	8280052
GO:0016176	Function	Superoxide-generating NADPH oxidase activator activity	IBA	21873635
GO:0022900	Process	Electron transport chain	IEA
GO:0032010	Component	Phagolysosome	TAS
GO:0034599	Process	Cellular response to oxidative stress	TAS
GO:0042554	Process	Superoxide anion generation	IBA	21873635
GO:0042554	Process	Superoxide anion generation	TAS	7938008
GO:0043020	Component	NADPH oxidase complex	IDA	8280052
GO:0043020	Component	NADPH oxidase complex	TAS	7938008
GO:0045087	Process	Innate immune response	TAS	7938008
GO:0045454	Process	Cell redox homeostasis	TAS
GO:0045730	Process	Respiratory burst	TAS	7938008
GO:0048010	Process	Vascular endothelial growth factor receptor signaling pathway	TAS
GO:0050790	Process	Regulation of catalytic activity	IEA

MIM	HGNC	e!Ensembl
608515	7661	ENSG00000116701

Protein

UniProt ID

P19878

Protein name

Neutrophil cytosol factor 2 (NCF-2) (67 kDa neutrophil oxidase factor) (NADPH oxidase activator 2) (Neutrophil NADPH oxidase factor 2) (p67-phox)

Protein function

Subunit of the phagocyte NADPH oxidase complex that mediates the transfer of electrons from cytosolic NADPH to O2 to produce the superoxide anion (O2(-)) (PubMed:12207919, PubMed:38355798). In the activated complex, electrons are first transferr

PDB

1E96 , 1HH8 , 1K4U , 1OEY , 1WM5 , 2DMO , 8WEJ

Family and domains

Pfam

Accession	ID	Position in sequence	Description	Type
PF13181	TPR_8	37 → 69	Tetratricopeptide repeat	Repeat
PF00018	SH3_1	246 → 291	SH3 domain	Domain
PF00564	PB1	351 → 429	PB1 domain	Domain
PF00018	SH3_1	463 → 508	SH3 domain	Domain

Sequence

MSLVEAISLWNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAF
TRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFA
CEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRHSKIDKAMECVWKQKLYEPVVIPVG
KLFRPNERQVAQLAKKDYLGKATVVASVVDQDSFSGFAPLQPQAAEPPPRPKTPEIFRAL
EGEAHRVLFGFVPETKEELQVMPGNIVFVLKKGNDNWATVMFNGQKGLVPCNYLEPVELR
IHPQQQPQEESSPQSDIPAPPSSKAPGRPQLSPGQKQKEEPKEVKLSVPMPYTLKVHYKY
TVVMKTQPGLPYSQVRDMVSKKLELRLEHTKLSYRPRDSNELVPLSEDSMKDAWGQVKNY
CLTLWCENTVGDQGFPDEPKESEKADANNQTTEPQLKKGSQVEALFSYEATQPEDLEFQE
GDIILVLSKVNEEWLEGECKGKVGIFPKVFVEDCATTDLESTRREV

Sequence length

526

Interactions

View interactions

	KEGG		Reactome
	Phagosome Osteoclast differentiation Neutrophil extracellular trap formation Leukocyte transendothelial migration Prion disease Leishmaniasis Chemical carcinogenesis - reactive oxygen species Diabetic cardiomyopathy Lipid and atherosclerosis Fluid shear stress and atherosclerosis		ROS and RNS production in phagocytes Cross-presentation of particulate exogenous antigens (phagosomes) Detoxification of Reactive Oxygen Species VEGFA-VEGFR2 Pathway RHO GTPases Activate NADPH Oxidases

Show/Hide Causal Diseases (2)

Disease term	Disease name	dbSNP ID	References
Causal
Granulomatous disease	Granulomatous Disease, Chronic, Autosomal Recessive, Cytochrome B-Positive, Type II, Chronic granulomatous disease	rs796065030, rs374402066, rs796065031, rs796065032, rs119103276, rs796065033, rs119103274, rs4029402, rs1563003964, rs119103270, rs1307080411, rs119103271, rs119103272, rs119103273, rs104894513 View all (100 more)	8286749, 20167518, 23910690, 18625437, 10498624, 10598813, 19624736, 9070911, 25937994, 11112388, 16937026
Rheumatoid arthritis	Rheumatoid Arthritis	rs587776843	12833524, 26546613, 30573655

Show/Hide Unknown Diseases (6)

Disease term	Disease name	References	Source
Unknown
Celiac disease	Celiac Disease, Celiac disease	26546613	ClinVar, GWAS
Chronic obstructive pulmonary disease	Chronic Obstructive Airway Disease		ClinVar
Osteomyelitis	Osteomyelitis		ClinVar
Otitis media	Otitis Media		ClinVar
Granulomatous Disease	granulomatous disease, chronic, autosomal recessive, cytochrome b-positive, type 2, chronic granulomatous disease		GenCC
Systemic lupus erythematosus	Systemic lupus erythematosus		GWAS

Show/Hide Text Mining Associations (61)

Disease Name	Relationship Type	References
Associations from Text Mining
Adenocarcinoma	Associate	27540973
Anal Gland Neoplasms	Associate	29454792
Aneurysm Ruptured	Associate	33174039
Arthritis Rheumatoid	Associate	17897462, 33145364
Atherosclerosis	Associate	34122426, 34925641
Atrial Fibrillation	Associate	35790963, 36863715
Autoimmune Diseases	Associate	34708124, 34971477
Carcinogenesis	Associate	21119665
Carcinoma Hepatocellular	Associate	36680322, 38287833
Carcinoma Non Small Cell Lung	Associate	33651148
Carcinoma Renal Cell	Associate	21944129, 34528699, 34708124
Colitis Ulcerative	Stimulate	39647286
Colonic Neoplasms	Associate	27540973
Congenital heart block	Associate	28626076
Coronary Artery Disease	Associate	31245869
Coronary Restenosis	Associate	35144391
Crohn Disease	Associate	29454792
Death	Stimulate	21944129
Diabetic Nephropathies	Associate	37038746
Dystonic Disorders	Associate	19279361
Friedreich Ataxia	Associate	27078885
Gaucher Disease	Inhibit	28011901
Gaucher Disease	Associate	28011901
Genetic Diseases Inborn	Associate	10498624, 7903171
Glioma	Associate	19423540
Granulomatous Disease Chronic	Associate	10233905, 10498624, 10627478, 10706888, 11262407, 1332032, 19953534, 22514628, 22924696, 23264412, 23306776, 29073922, 30506560, 33717137, 33746979 View all (11 more)
Granulomatous Disease Chronic	Inhibit	33717137, 7803798, 8182143, 8286749
Granulomatous Disease Chronic Autosomal Recessive Cytochrome B Positive Type II	Inhibit	10498624
Granulomatous Disease Chronic Autosomal Recessive Cytochrome B Positive Type II	Associate	10498624, 19953534
Heart Failure	Stimulate	18387435
Hyperlipidemias	Stimulate	31245869
Hypertension	Associate	29463833
Immunologic Deficiency Syndromes	Stimulate	23306776
Inflammation	Associate	21944129, 28011901, 37038746
Inflammation	Stimulate	28626076
Inflammatory Bowel Diseases	Associate	21900546, 39273699
Intracranial Aneurysm	Associate	33174039
Lung Diseases	Associate	22514628
Lupus Erythematosus Systemic	Associate	22046141, 22203994, 23740754, 24163247, 25795782, 26606652, 29070082, 34971477, 38442270
Metabolic Diseases	Associate	22904171
Metabolic Syndrome	Associate	31796056
MINOCA	Associate	31245869
Multiple Myeloma	Stimulate	37775746
Myocardial Infarction	Associate	34490057
Myopathy Central Core	Associate	36035208
Neoplasm Metastasis	Associate	34708124
Neoplasms	Associate	21119665, 34708124
Neoplasms	Inhibit	34971930
Neoplasms Squamous Cell	Associate	21119665
Non alcoholic Fatty Liver Disease	Associate	35790963
Obesity	Stimulate	27056885
Obesity	Associate	27765769, 37063877
Periodontitis	Associate	37063877
Polycystic Ovary Syndrome	Associate	22904171, 27056885
Psoriasis	Associate	34122426
Seizures	Associate	38166692
Sjogren's Syndrome	Associate	29070082
Squamous Cell Carcinoma of Head and Neck	Inhibit	34971930
ST Elevation Myocardial Infarction	Stimulate	31245869
Urinary Bladder Neoplasms	Associate	34589136
Uterine Cervical Dysplasia	Associate	21119665

NCF2 (neutrophil cytosolic factor 2)