Gene
Entrez ID Entrez Gene ID - the GENE ID in NCBI Gene database.
2992
Gene name Gene Name - the full gene name approved by the HGNC.
Glycogenin 1
Gene symbol Gene Symbol - the official gene symbol approved by the HGNC.
GYG1
Synonyms (NCBI Gene) Gene synonyms aliases
GSD15, GYG
Disease Acronyms (UniProt) Disease acronyms from UniProt database
GSD15
Chromosome Chromosome number
3
Chromosome location Chromosomal Location - indicates the cytogenetic location of the gene or region on the chromosome.
3q24
Summary Summary of gene provided in NCBI Entrez Gene.
This gene encodes a member of the glycogenin family. Glycogenin is a glycosyltransferase that catalyzes the formation of a short glucose polymer from uridine diphosphate glucose in an autoglucosylation reaction. This reaction is followed by elongation and
SNPs SNP information provided by dbSNP.
SNP ID Visualize variation Clinical significance Consequence
rs143137713 G>C Pathogenic, pathogenic-likely-pathogenic Genic upstream transcript variant, missense variant, coding sequence variant
rs267606858 C>A,G,T Pathogenic, uncertain-significance Coding sequence variant, genic upstream transcript variant, missense variant
rs370652040 G>C,T Pathogenic Intron variant, genic upstream transcript variant
rs727502869 C>T Pathogenic Stop gained, coding sequence variant, synonymous variant
rs727502870 G>A Pathogenic Stop gained, intron variant, coding sequence variant
miRNA miRNA information provided by mirtarbase database.
miRTarBase ID miRNA Experiments Reference
MIRT025494 hsa-miR-34a-5p Proteomics 21566225
MIRT025494 hsa-miR-34a-5p Proteomics 21566225
MIRT052247 hsa-let-7b-5p CLASH 23622248
MIRT049896 hsa-miR-31-5p CLASH 23622248
MIRT1038823 hsa-miR-1184 CLIP-seq
Gene ontology (GO) Gene ontology information of associated ontologies with gene provided by GO database.
GO ID Ontology Definition Evidence Reference
GO:0005515 Function Protein binding IPI 16189514, 17055998, 25416956
GO:0005576 Component Extracellular region TAS
GO:0005829 Component Cytosol TAS
GO:0005978 Process Glycogen biosynthetic process IBA 21873635
GO:0005978 Process Glycogen biosynthetic process IEA
Other IDs Other ids provides unique ids of gene in databases such as OMIM, HGNC, ENSEMBLE.
MIM HGNC e!Ensembl
603942 4699 ENSG00000163754
Protein
UniProt ID P46976
Protein name Glycogenin-1 (GN-1) (GN1) (EC 2.4.1.186)
Protein function Glycogenin participates in the glycogen biosynthetic process along with glycogen synthase and glycogen branching enzyme. It catalyzes the formation of a short alpha (1,4)-glucosyl chain covalently attached via a glucose 1-O-tyrosyl linkage to in
PDB 3Q4S , 3QVB , 3RMV , 3RMW , 3T7M , 3T7N , 3T7O , 3U2T , 3U2U , 3U2V , 3U2W , 3U2X , 6EQJ , 6EQL , 7OVX , 7Q0B , 7Q0S , 7Q12 , 7Q13 , 7ZBN , 8CVX , 8CVY , 8CVZ
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF01501 Glyco_transf_8 6 224 Glycosyl transferase family 8 Family
Tissue specificity TISSUE SPECIFICITY: Highly expressed in skeletal muscle and heart, with lower levels in brain, lung, kidney and pancreas. {ECO:0000269|PubMed:8602861}.
Sequence
Sequence length 350
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  KEGG   Reactome
  Starch and sucrose metabolism
Metabolic pathways
  Glycogen synthesis
Myoclonic epilepsy of Lafora
Glycogen storage disease type XV (GYG1)
Glycogen storage disease type 0 (muscle GYS1)
Glycogen storage disease type II (GAA)
Neutrophil degranulation
Glycogen breakdown (glycogenolysis)
Associated diseases Disease information provided by ClinVar, GenCC, and GWAS databases.
Causal
Disease term Disease name dbSNP ID References
Cardiomyopathy Cardiomyopathies rs267607003, rs267607002, rs267607004, rs63750743, rs121908333, rs121908334, rs104894655, rs121434420, rs121434421, rs193922674, rs111517471, rs121908987, rs193922384, rs121909374, rs121909377
View all (900 more)
Glycogen storage disease Glycogen Storage Disease, GLYCOGEN STORAGE DISEASE XV rs10250779, rs387906244, rs113994126, rs113994129, rs113994134, rs369973784, rs199922945, rs118203964, rs113994132, rs387906246, rs113994128, rs267606639, rs267606640, rs755419857, rs895690691
View all (721 more)
20357282, 25272951, 22160680, 26652229, 27718144, 26255073
Polyglucosan body myopathy POLYGLUCOSAN BODY MYOPATHY 2, Polyglucosan body myopathy type 2 rs727503762, rs727503763, rs727503764, rs566912235, rs727503765, rs730880329, rs587777561, rs730880330, rs370652040, rs727502869, rs143137713, rs727502870, rs727502871, rs1555787903, rs780854072
View all (3 more)
26255073, 29143313, 26652229, 28453664, 27718144, 25272951, 29264399, 20357282
Ventricular fibrillation Ventricular Fibrillation rs137854604, rs587782933, rs190140598
Unknown
Disease term Disease name Evidence References Source
Dementia Dementia GWAS
Atrial Fibrillation Atrial Fibrillation GWAS
Associations from Text Mining
Disease Name Relationship Type References
Arrhythmias Cardiac Associate 20357282
Cardiomyopathies Associate 27718144, 31628455
Cardiomyopathy Dilated Associate 27718144
Cardiovascular Diseases Associate 38062767
Compartment Syndromes Associate 33257366
Cytomegalovirus Infections Associate 32838938
Genetic Diseases Inborn Associate 26652229
Glycogen Storage Disease Associate 22198226, 25272951
Heart Failure Associate 27718144
Inflammation Associate 38427757