Gene
Entrez ID Entrez Gene ID - the GENE ID in NCBI Gene database.
2743
Gene name Gene Name - the full gene name approved by the HGNC.
Glycine receptor beta
Gene symbol Gene Symbol - the official gene symbol approved by the HGNC.
GLRB
Synonyms (NCBI Gene) Gene synonyms aliases
HKPX2
Disease Acronyms (UniProt) Disease acronyms from UniProt database
HKPX2
Chromosome Chromosome number
4
Chromosome location Chromosomal Location - indicates the cytogenetic location of the gene or region on the chromosome.
4q32.1
Summary Summary of gene provided in NCBI Entrez Gene.
This gene encodes the beta subunit of the glycine receptor, which is a pentamer composed of alpha and beta subunits. The receptor functions as a neurotransmitter-gated ion channel, which produces hyperpolarization via increased chloride conductance due to
SNPs SNP information provided by dbSNP.
SNP ID Visualize variation Clinical significance Consequence
rs121909749 G>A Pathogenic Missense variant, coding sequence variant, non coding transcript variant
rs147320218 C>T Likely-benign, conflicting-interpretations-of-pathogenicity Synonymous variant, non coding transcript variant, coding sequence variant
rs281864922 G>A Likely-pathogenic Intron variant
rs398122856 T>G Pathogenic Coding sequence variant, missense variant, non coding transcript variant
rs1380139789 C>- Pathogenic Coding sequence variant, frameshift variant, non coding transcript variant, genic upstream transcript variant
miRNA miRNA information provided by mirtarbase database.
miRTarBase ID miRNA Experiments Reference
MIRT2002659 hsa-miR-18a CLIP-seq
MIRT2002660 hsa-miR-18b CLIP-seq
MIRT2002661 hsa-miR-4698 CLIP-seq
MIRT2002662 hsa-miR-4735-3p CLIP-seq
MIRT2002663 hsa-miR-4769-3p CLIP-seq
Gene ontology (GO) Gene ontology information of associated ontologies with gene provided by GO database.
GO ID Ontology Definition Evidence Reference
GO:0001964 Process Startle response IMP 11929858
GO:0004888 Function Transmembrane signaling receptor activity IEA
GO:0005254 Function Chloride channel activity IBA 21873635
GO:0005515 Function Protein binding IPI 11929858, 15215304, 26613940
GO:0005737 Component Cytoplasm IEA
Other IDs Other ids provides unique ids of gene in databases such as OMIM, HGNC, ENSEMBLE.
MIM HGNC e!Ensembl
138492 4329 ENSG00000109738
Protein
UniProt ID P48167
Protein name Glycine receptor subunit beta (Glycine receptor 58 kDa subunit)
Protein function Subunit of heteromeric glycine-gated chloride channels (PubMed:11929858, PubMed:15302677, PubMed:16144831, PubMed:22715885, PubMed:23238346, PubMed:25445488, PubMed:34473954, PubMed:8717357). Plays an important role in the down-regulation of neu
PDB 5BKF , 5BKG , 7KUY , 7L31 , 8DN2 , 8DN3 , 8DN4 , 8DN5
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF02931 Neur_chan_LBD 56 266 Neurotransmitter-gated ion-channel ligand binding domain Family
PF02932 Neur_chan_memb 273 493 Neurotransmitter-gated ion-channel transmembrane region Family
Sequence
Sequence length 497
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  KEGG   Reactome
  Neuroactive ligand-receptor interaction   Neurotransmitter receptors and postsynaptic signal transmission
Associated diseases Disease information provided by ClinVar, GenCC, and GWAS databases.
Causal
Disease term Disease name dbSNP ID References
Hereditary hyperekplexia Hereditary hyperekplexia rs121918408, rs121918410, rs281864915, rs121918415, rs121918418, rs281864914, rs281864916, rs281864921, rs281864919, rs281864918, rs199547699, rs760390019, rs1554083576, rs1468001309
Hyperekplexia Hereditary Hyperexplexia, HYPEREKPLEXIA 2 rs121908493, rs281864924, rs121908495, rs121908496, rs121908497, rs121909749, rs281864922, rs121918408, rs121918409, rs121918410, rs121918411, rs121918412, rs121918413, rs281864915, rs121918415
View all (33 more)
23238346, 11929858, 21391991, 23184146
Mental retardation Intellectual Disability rs5742905, rs267607136, rs267607137, rs2131714307, rs267607038, rs267607042, rs80338685, rs137853127, rs80338815, rs28940893, rs387906309, rs121908096, rs121908099, rs587784365, rs121918315
View all (1024 more)
Myopia Myopia rs387907109, rs146936371, rs587776903, rs786205127, rs398122836, rs199624584, rs587777625, rs786205216, rs758872875, rs764211125, rs1135402746, rs765658563, rs1555941129, rs1555941116, rs199923805
View all (6 more)
Unknown
Disease term Disease name Evidence References Source
Hereditary Hyperekplexia hereditary hyperekplexia GenCC
Associations from Text Mining
Disease Name Relationship Type References
Agnosia Associate 38482990
Agoraphobia Associate 28872638
Aphasia Associate 27251476
Autistic Disorder Associate 15090072
Bipolar Disorder Associate 38482990
Cognition Disorders Associate 38482990
Developmental Disabilities Associate 27251476
Hyperekplexia Associate 23238346, 33323420, 35526563
Hyperexplexia hereditary Associate 23238346
Intellectual Disability Associate 22669415, 38482990