Gene
Entrez ID Entrez Gene ID - the GENE ID in NCBI Gene database.
271
Gene name Gene Name - the full gene name approved by the HGNC.
Adenosine monophosphate deaminase 2
Gene symbol Gene Symbol - the official gene symbol approved by the HGNC.
AMPD2
Synonyms (NCBI Gene) Gene synonyms aliases
AMPD, PCH9, SPG63
Chromosome Chromosome number
1
Chromosome location Chromosomal Location - indicates the cytogenetic location of the gene or region on the chromosome.
1p13.3
Summary Summary of gene provided in NCBI Entrez Gene.
The protein encoded by this gene is important in purine metabolism by converting AMP to IMP. The encoded protein, which acts as a homotetramer, is one of three AMP deaminases found in mammals. Several transcript variants encoding different isoforms have b
SNPs SNP information provided by dbSNP.
SNP ID Visualize variation Clinical significance Consequence
rs41280332 A>G Uncertain-significance, conflicting-interpretations-of-pathogenicity Intron variant
rs145268448 C>A Conflicting-interpretations-of-pathogenicity Intron variant
rs192669225 G>A Likely-pathogenic Missense variant, intron variant, coding sequence variant, non coding transcript variant
rs587777391 G>- Pathogenic Coding sequence variant, frameshift variant, non coding transcript variant, intron variant
rs587777392 G>C Pathogenic Coding sequence variant, missense variant, non coding transcript variant
miRNA miRNA information provided by mirtarbase database.
miRTarBase ID miRNA Experiments Reference
MIRT052568 hsa-let-7a-5p CLASH 23622248
MIRT051656 hsa-let-7e-5p CLASH 23622248
MIRT050367 hsa-miR-24-3p CLASH 23622248
MIRT047663 hsa-miR-10a-5p CLASH 23622248
MIRT041932 hsa-miR-484 CLASH 23622248
Gene ontology (GO) Gene ontology information of associated ontologies with gene provided by GO database.
GO ID Ontology Definition Evidence Reference
GO:0003876 Function AMP deaminase activity IBA
GO:0003876 Function AMP deaminase activity IEA
GO:0003876 Function AMP deaminase activity IGI 23911318
GO:0003876 Function AMP deaminase activity NAS 8764830
GO:0005515 Function Protein binding IPI 21044950, 25416956, 31515488, 32296183, 33961781, 34819669
Other IDs Other ids provides unique ids of gene in databases such as OMIM, HGNC, ENSEMBLE.
MIM HGNC e!Ensembl
102771 469 ENSG00000116337
Protein
UniProt ID Q01433
Protein name AMP deaminase 2 (EC 3.5.4.6) (AMP deaminase isoform L)
Protein function AMP deaminase plays a critical role in energy metabolism. Catalyzes the deamination of AMP to IMP and plays an important role in the purine nucleotide cycle.
PDB 4NO3 , 4NO5 , 8HU6 , 8HUB
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF00962 A_deaminase 411 818 Adenosine/AMP deaminase Domain
Tissue specificity TISSUE SPECIFICITY: Highly expressed in cerebellum. {ECO:0000269|PubMed:23911318}.
Sequence
MRNRGQGLFRLRSRCFLHQSLPLGAGRRKGLDVAEPGPSRCRSDSPAVAAVVPAMASYPS
GSGKPKAKYPFKKRASLQASTAAPEARGGLGAPPLQSARSLPGPAPCLKHFPLDLRTSMD
GKCKEIAEELFTRSLAESELRSAPYEFPEESPIEQLEERRQRLERQISQDVKLEPDILLR
AKQDFLKTDSDSDLQLYKEQGEGQGDRSLRERDVLEREFQRVTISGEEKCGVPFTDLLDA
AKSVVRALFIREKYMALSLQSFCPTTRRYLQQLAEKPLETRTYEQGPDTPVSADAPVHPP
ALEQHPYEHCEPSTMPGDLGLGLRMVRGVVHVYTRREPDEHCSEVELPYPDLQEFVADVN
VLMALIINGPIKSFCYRRLQYLSSKFQMHVLLNEMKELAAQKKVPHRDFYNIRKVDTHIH
ASSCMNQKHLLRFIKRAMKRHLEEIVHVEQGREQTLREVFESMNLTAYDLSVDTLDVHAD
RNTFHRFDKFNAKYNPIGESVLREIFIKTDNRVSGKYFAHIIKEVMSDLEESKYQNAELR
LSIYGRSRDEWDKLARWAVMHRVHSPNVRWLVQVPRLFDVYRTKGQLANFQEMLENIFLP
LFEATVHPASHPELHLFLEHVDGFDSVDDESKPENHVFNLESPLPEAWVEEDNPPYAYYL
YYTFANMAMLNHLRRQRGFHTFVLRPHCGEAGPIHHLVSAFMLAENISHGLLLRKAPVLQ
YLYYLAQIGIAMSPLSNNSLFLSYHRNPLPEYLSRGLMVSLSTDDPLQFHFTKEPLMEEY
SIATQVWKLSSCDMCELARNSVLMSGFSHKVKSHWLGP
NYTKEGPEGNDIRRTNVPDIRV
GYRYETLCQELALITQAVQSEMLETIPEEAGITMSPGPQ
Sequence length 879
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  KEGG   Reactome
  Purine metabolism
Metabolic pathways
Nucleotide metabolism
Cytoskeleton in muscle cells
  Purine salvage
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Associated diseases Disease associations categorized as Causal (pathogenic variants), Unknown (uncertain genetic evidence), or Text Mining (literature-based associations)
Causal Diseases caused by PATHOGENIC or LIKELY PATHOGENIC variants from ClinVar only
Disease merge term Disease name dbSNP ID References
Hereditary spastic paraplegia Hereditary spastic paraplegia 63 rs587777395, rs587777769 N/A
Pontoneocerebellar hypoplasia pontocerebellar hypoplasia type 9, pontoneocerebellar hypoplasia rs760433806, rs587777392, rs587777393, rs587777394, rs587777395, rs875989844, rs1553230375, rs753591864, rs1650621772, rs587777391 N/A
Unknown Includes: (1) ClinVar NON-pathogenic variants (Uncertain, Benign, Conflicting, VUS), (2) GenCC associations, (3) GWAS associations, (4) CBGDA evidence-based associations. NOTE: Diseases with pathogenic evidence are excluded to avoid conflicts.
Disease merge term Disease name Evidence References Source
Breast cancer Breast cancer, Breast cancer (estrogen-receptor positive) N/A N/A GWAS
Mental retardation intellectual disability N/A N/A ClinVar
Microcephaly microcephaly N/A N/A ClinVar
Associations from Text Mining Disease associations identified through Pubtator
Disease Name Relationship Type References
Brain Stem Neoplasms Associate 29463858
Depression Postpartum Associate 29463858
Developmental Disabilities Associate 29463858
Inflammatory Bowel Diseases Associate 19253308
Lupus Erythematosus Systemic Associate 30577810
Microcephaly Associate 29463858
Muscle Spasticity Associate 29463858
Pontocerebellar Hypoplasia Associate 29463858
Vision Disorders Associate 29463858