Gene
Entrez ID Entrez Gene ID - the GENE ID in NCBI Gene database.
26047
Gene name Gene Name - the full gene name approved by the HGNC.
Contactin associated protein 2
Gene symbol Gene Symbol - the official gene symbol approved by the HGNC.
CNTNAP2
Synonyms (NCBI Gene) Gene synonyms aliases
AUTS15, CASPR2, CDFE, NRXN4, PTHSL1
Disease Acronyms (UniProt) Disease acronyms from UniProt database
AUTS15, PTHSL1
Chromosome Chromosome number
7
Chromosome location Chromosomal Location - indicates the cytogenetic location of the gene or region on the chromosome.
7q35-q36.1
Summary Summary of gene provided in NCBI Entrez Gene.
This gene encodes a member of the neurexin family which functions in the vertebrate nervous system as cell adhesion molecules and receptors. This protein, like other neurexin proteins, contains epidermal growth factor repeats and laminin G domains. In add
SNPs SNP information provided by dbSNP.
SNP ID Visualize variation Clinical significance Consequence
rs2710102 A>G,T Risk-factor Intron variant, genic downstream transcript variant
rs7794745 A>T Risk-factor Intron variant
rs73464271 G>A Uncertain-significance, conflicting-interpretations-of-pathogenicity Genic downstream transcript variant, missense variant, coding sequence variant
rs78223661 T>G Conflicting-interpretations-of-pathogenicity Intron variant
rs121908445 T>C Risk-factor, conflicting-interpretations-of-pathogenicity Genic downstream transcript variant, missense variant, coding sequence variant
miRNA miRNA information provided by mirtarbase database.
miRTarBase ID miRNA Experiments Reference
MIRT024222 hsa-miR-218-5p Sequencing 20371350
MIRT044172 hsa-miR-99b-5p CLASH 23622248
MIRT573937 hsa-miR-548u PAR-CLIP 20371350
MIRT573936 hsa-miR-7161-5p PAR-CLIP 20371350
MIRT573935 hsa-miR-8087 PAR-CLIP 20371350
Transcription factors
Transcription factor Regulation Reference
FOXP2 Repression 18987364
FOXP2 Unknown 19582487
TCF4 Activation 22777675
Gene ontology (GO) Gene ontology information of associated ontologies with gene provided by GO database.
GO ID Ontology Definition Evidence Reference
GO:0005515 Function Protein binding IPI 25416956, 26721881, 32296183
GO:0005769 Component Early endosome IDA 19706678
GO:0005794 Component Golgi apparatus IDA 19166515
GO:0007155 Process Cell adhesion IEA
GO:0007420 Process Brain development TAS 10624965
Other IDs Other ids provides unique ids of gene in databases such as OMIM, HGNC, ENSEMBLE.
MIM HGNC e!Ensembl
604569 13830 ENSG00000174469
Protein
UniProt ID Q9UHC6
Protein name Contactin-associated protein-like 2 (Cell recognition molecule Caspr2)
Protein function Required for gap junction formation (Probable). Required, with CNTNAP1, for radial and longitudinal organization of myelinated axons. Plays a role in the formation of functional distinct domains critical for saltatory conduction of nerve impulse
PDB 5Y4M
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF00754 F5_F8_type_C 47 178 F5/8 type C domain Domain
PF02210 Laminin_G_2 216 345 Laminin G domain Domain
PF02210 Laminin_G_2 401 529 Laminin G domain Domain
PF02210 Laminin_G_2 827 945 Laminin G domain Domain
PF02210 Laminin_G_2 1055 1187 Laminin G domain Domain
Tissue specificity TISSUE SPECIFICITY: Predominantly expressed in nervous system. {ECO:0000269|PubMed:10624965}.
Sequence
MQAAPRAGCGAALLLWIVSSCLCRAWTAPSTSQKCDEPLVSGLPHVAFSSSSSISGSYSP
GYAKINKRGGAGGWSPSDSDHYQWLQVDFGNRKQISAIATQGRYSSSDWVTQYRMLYSDT
GRNWKPYHQDGNIWAFPGNINSDGVVRHELQHPIIARYVRIVPLDWNGEGRIGLRIEV
YG
CSYWADVINFDGHVVLPYRFRNKKMKTLKDVIALNFKTSESEGVILHGEGQQGDYITLEL
KKAKLVLSLNLGSNQLGPIYGHTSVMTGSLLDDHHWHSVVIERQGRSINLTLDRSMQHFR
TNGEFDYLDLDYEITFGGIPFSGKPSSSSRKNFKGCMESINYNGV
NITDLARRKKLEPSN
VGNLSFSCVEPYTVPVFFNATSYLEVPGRLNQDLFSVSFQFRTWNPNGLLVFSHFADNLG
NVEIDLTESKVGVHINITQTKMSQIDISSGSGLNDGQWHEVRFLAKENFAILTIDGDEAS
AVRTNSPLQVKTGEKYFFGGFLNQMNNSSHSVLQPSFQGCMQLIQVDDQ
LVNLYEVAQRK
PGSFANVSIDMCAIIDRCVPNHCEHGGKCSQTWDSFKCTCDETGYSGATCHNSIYEPSCE
AYKHLGQTSNYYWIDPDGSGPLGPLKVYCNMTEDKVWTIVSHDLQMQTPVVGYNPEKYSV
TQLVYSASMDQISAITDSAEYCEQYVSYFCKMSRLLNTPDGSPYTWWVGKANEKHYYWGG
SGPGIQKCACGIERNCTDPKYYCNCDADYKQWRKDAGFLSYKDHLPVSQVVVGDTDRQGS
EAKLSVGPLRCQGDRNYWNAASFPNPSSYLHFSTFQGETSADISFYFKTLTPWGVFLENM
GKEDFIKLELKSATEVSFSFDVGNGPVEIVVRSPTPLNDDQWHRVTAERNVKQASLQVDR
LPQQIRKAPTEGHTRLELYSQLFVGGAGGQQGFLGCIRSLRMNGV
TLDLEERAKVTSGFI
SGCSGHCTSYGTNCENGGKCLERYHGYSCDCSNTAYDGTFCNKDVGAFFEEGMWLRYNFQ
APATNARDSSSRVDNAPDQQNSHPDLAQEEIRFSFSTTKAPCILLYISSFTTDFLAVLVK
PTGSLQIRYNLGGTREPYNIDVDHRNMANGQPHSVNITRHEKTIFLKLDHYPSVSYHLPS
SSDTLFNSPKSLFLGKVIETGKIDQEIHKYNTPGFTGCLSRVQFNQI
APLKAALRQTNAS
AHVHIQGELVESNCGASPLTLSPMSSATDPWHLDHLDSASADFPYNPGQGQAIRNGVNRN
SAIIGGVIAVVIFTILCTLVFLIRYMFRHKGTYHTNEAKGAESAESADAAIMNNDPNFTE
TIDESKKEWLI
Sequence length 1331
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  KEGG  
  Cell adhesion molecules  
Associated diseases Disease information provided by ClinVar, GenCC, and GWAS databases.
Causal
Disease term Disease name dbSNP ID References
Alzheimer disease Alzheimer`s Disease rs63750215, rs28936379, rs63749851, rs63749884, rs28936380, rs63750048, rs63750579, rs63750264, rs63749964, rs63750671, rs281865161, rs63750066, rs63750399, rs63750734, rs63751039
View all (65 more)
26049409, 30617256, 31473137
Autism NON RARE IN EUROPE: Autism, Autistic Disorder rs121964908, rs62643608, rs181327458, rs797046134, rs869312704, rs1555013332, rs876657679, rs1057518999, rs1057518658, rs771827120, rs1555187899, rs773080572, rs753871454, rs1684130791, rs1684180699
View all (8 more)
18621663, 18179894, 21310003, 22843504, 20157312
Autism spectrum disorder Autism Spectrum Disorders rs724159978, rs75184679, rs119103221, rs9332964, rs121912562, rs1594344233, rs727504317, rs111033204, rs1801086, rs587784464, rs724159948, rs764659822, rs794727977, rs796052733, rs796052728
View all (51 more)
21962519, 30763456, 21082657, 20176116, 21572417
Cortical dysplasia-focal epilepsy syndrome Cortical dysplasia-focal epilepsy syndrome rs730880275, rs730880276, rs267601384, rs398124268, rs752550849, rs1085307838, rs149032771, rs1554400338, rs201076428, rs1554490549, rs771827120, rs1391540245, rs972116002, rs1584848275, rs1585020100
View all (4 more)
Unknown
Disease term Disease name Evidence References Source
Celiac disease Celiac Disease ClinVar
Mental depression Unipolar Depression, Major Depressive Disorder 23123147 ClinVar
Neurodevelopmental Disorders complex neurodevelopmental disorder GenCC
Tendinopathy Tendinopathy GWAS
Associations from Text Mining
Disease Name Relationship Type References
Abnormalities Drug Induced Associate 22872700, 27484312
Alzheimer Disease Associate 37302762
Aphasia Associate 26909962
Apraxias Associate 21108403, 22738016
Atrophy Associate 27484312
Attention Deficit Disorder with Hyperactivity Associate 19546859, 34641913, 37667328
Autism Spectrum Disorder Associate 20176116, 20838614, 21108403, 21193173, 22892527, 23074245, 26909962, 29703944, 30763456, 31993662, 32081867, 33076578, 34257739, 34271514, 34471112
View all (4 more)
Autistic Disorder Associate 17978184, 18179879, 18179893, 18179894, 18987363, 19546859, 20176116, 20574149, 21048216, 21193173, 21310003, 21448237, 22500773, 22738016, 22843504
View all (13 more)
Autistic Disorder Inhibit 25444170
Autoimmune limbic encephalitis Associate 38386048