Gene Gene information from NCBI Gene database.
Entrez ID 256764
Gene name WD repeat domain 72
Gene symbol WDR72
Synonyms (NCBI Gene)
AI2A3
Chromosome 15
Chromosome location 15q21.3
Summary This gene encodes a protein with eight WD-40 repeats. Mutations in this gene have been associated with amelogenesis imperfecta hypomaturation type 2A3. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Mar 2013]
SNPs SNP information provided by dbSNP.
10
SNP ID Visualize variation Clinical significance Consequence
rs143816093 C>G,T Pathogenic Coding sequence variant, stop gained, missense variant, genic upstream transcript variant, non coding transcript variant
rs267607178 G>A,C Pathogenic Genic upstream transcript variant, missense variant, coding sequence variant, non coding transcript variant, stop gained
rs557128345 G>A Pathogenic Stop gained, coding sequence variant, non coding transcript variant, genic upstream transcript variant
rs606231351 T>- Pathogenic Genic upstream transcript variant, frameshift variant, coding sequence variant, non coding transcript variant
rs606231462 AT>- Pathogenic Genic upstream transcript variant, frameshift variant, coding sequence variant, non coding transcript variant
miRNA miRNA information provided by mirtarbase database.
292
miRTarBase ID miRNA Experiments Reference
MIRT515415 hsa-miR-8485 HITS-CLIP 21572407
MIRT515414 hsa-miR-329-3p HITS-CLIP 21572407
MIRT515413 hsa-miR-362-3p HITS-CLIP 21572407
MIRT515412 hsa-miR-603 HITS-CLIP 21572407
MIRT515411 hsa-miR-4789-3p HITS-CLIP 21572407
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
5
GO ID Ontology Definition Evidence Reference
GO:0005737 Component Cytoplasm IBA
GO:0005737 Component Cytoplasm IDA 20938048
GO:0031214 Process Biomineral tissue development IEA
GO:0031410 Component Cytoplasmic vesicle IEA
GO:0072659 Process Protein localization to plasma membrane IBA
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
613214 26790 ENSG00000166415
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
Q3MJ13
Protein name WD repeat-containing protein 72
Protein function Plays a major role in formation of tooth enamel (PubMed:19853237, PubMed:25008349). Specifically required during the maturation phase of amelogenesis for normal formation of the enamel matrix and clearance of enamel proteins. May be involved in
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF00400 WD40 452 495 WD domain, G-beta repeat Repeat
PF00400 WD40 547 585 WD domain, G-beta repeat Repeat
Sequence
MRTSLQAVALWGQKAPPHSITAIMITDDQRTIVTGSQEGQLCLWNLSHELKISAKELLFG
HSASVTCLARARDFSKQPYIVSAAENGEMCVWNVTNGQCMEKATLPYRHTAICYYHCSFR
MTGEGWLLCCGEYQDVLIIDAKTLAVVHSFRSSQFPDWINCMCIVHSMRIQEDSLLVVSV
AGELKVWDLSSSINSIQEKQDVYEKESKFLESLNCQTIRFCTYTERLLLVVFSKCWKVYD
YCDFSLLLTEVSRNGQFFAGGEVIAAHRILIWTEDGHSYIYQLLNSGLSKSIYPADGRVL
KETIYPHLLCSTSVQENKEQSRPFVMGYMNERKEPFYKVLFSGEVSGRITLWHIPDVPVS
KFDGSPREIPVTATWTLQDNFDKHDTMSQSIIDYFSGLKDGAGTAVVTSSEYIPSLDKLI
CGCEDGTIIITQALNAAKARLLEGGSLVKDSPPHKVLKGHHQSVTSLLYPHGLSSKLDQS
WMLSGDLDSCVILWD
IFTEEILHKFFLEAGPVTSLLMSPEKFKLRGEQIICCVCGDHSVA
LLHLEGKSCLLHARKHLFPVRMIKWHPVENFLIVGCADDSVYIWEIETGTLERHETGERA
RIILNCCDDSQLVKSVLPIASETLKHKSIEQRSSSPYQLGPLPCPGLQVESSCKVTDAKF
CPRPFNVLPVKTKWSNVGFHILLFDLENLVELLLPTPLSDVDSSSSFYGGEVLRRAKSTV
EKKTLTLRKSKTACGPLSAEALAKPITESLAQGDNTIKFSEENDGIKRQKKMKISKKMQP
KPSRKVDASLTIDTAKLFLSCLLPWGVDKDLDYLCIKHLNILKLQGPISLGISLNEDNFS
LMLPGWDLCNSGMIKDYSGVNLFSRKVLDLSDKYTATLPNQVGIPRGLENNCDSLRESDT
IVYLLSRLFLVNKLVNMPLELACRVGSSFRMESIHNKMRGAGNDILNMSSFYSCLRNGKN
ESHVPEADLSLLKLISCWRDQSVQVTEAIQAVLLAEVQQHMKSLGKIPVNSQPVSMAENG
NCEMKQMLPKLEWTEELELQCVRNTLPLQTPVSPVKHDSNSNSANFQDVEDMPDRCALEE
SESPGEPRHHSWIAKVCPCKVS
Sequence length 1102
Interactions View interactions
Associated diseases Disease associations from ClinVar categorized as Causal (Pathogenic/Likely Pathogenic) or Unknown.
282
Causal Diseases associated with Pathogenic or Likely Pathogenic variants in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession
Amelogenesis imperfecta Pathogenic; Likely pathogenic rs2543070545, rs764406738, rs2542089179, rs779460257, rs770804941 RCV003313811
RCV003314736
RCV003314737
RCV004018350
RCV000604368
Amelogenesis imperfecta hypomaturation type 2A3 Pathogenic; Likely pathogenic rs267607178, rs143816093, rs606231351, rs606231462, rs142154661, rs2542109823, rs757690372, rs756471926, rs2543065306, rs2017517553, rs1431736022, rs779460257, rs770804941, rs557128345 RCV000000255
RCV000000256
RCV000000257
RCV000148931
RCV003154853
RCV003154854
RCV003154857
RCV003154858
RCV003232053
RCV003989994
RCV003990417
RCV005006363
RCV002272302
RCV002491342
Distal renal tubular acidosis Likely pathogenic; Pathogenic rs1469562355, rs2140558454 RCV001849578
RCV001849708
Hypophosphatemic rickets Likely pathogenic; Pathogenic rs1469562355 RCV001845037
Unknown Diseases with uncertain, conflicting, or no pathogenic evidence in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession
Amelogenesis Imperfecta, Recessive Benign; Likely benign; Uncertain significance; Conflicting classifications of pathogenicity rs17730281, rs6416452, rs551225, rs690337, rs690346, rs34828731, rs886051282, rs201133545, rs181220553, rs7175439, rs1555402394, rs777102975, rs796396291, rs886051286, rs1555402422
View all (46 more)
RCV000271084
RCV000374023
RCV000395326
RCV000305918
RCV000360705
RCV000261294
RCV000314022
RCV000331630
RCV000365012
RCV000325673
RCV000286064
RCV000337687
RCV000376928
RCV000284894
RCV000279164
RCV000309509
RCV000378066
RCV000281235
RCV000321047
RCV000395515
RCV000306737
RCV000299679
RCV000302451
RCV000276815
RCV000343117
RCV000334884
RCV000397887
RCV000314727
RCV000264798
RCV000305543
RCV000272993
RCV000382563
RCV000324806
RCV000336582
RCV000366589
RCV000269662
RCV000372177
RCV000280000
RCV000399327
RCV000265596
RCV000387979
RCV000341062
RCV000327100
RCV000381734
RCV000273124
RCV000268015
RCV000261681
RCV000355817
RCV000299590
RCV000356649
RCV000274143
RCV000367805
RCV000360592
RCV000319861
RCV000346282
RCV000356738
RCV000330361
RCV000353977
RCV000378207
RCV000281212
RCV000366046
RCV000321461
RCV000344777
RCV000370960
RCV000397949
RCV000401600
RCV000315500
RCV000327013
RCV000305639
RCV000387232
RCV000381502
RCV000289347
RCV000402275
RCV000350167
RCV000344229
Cholangiocarcinoma Conflicting classifications of pathogenicity rs17630660 RCV005893398
Gastric cancer Likely benign rs188590145 RCV005913745
Thymoma Conflicting classifications of pathogenicity rs17630660 RCV005893397
Associations from Text MiningDisease associations identified through Pubtator
Disease Name Relationship Type References
Acidosis Associate 30779877
Acidosis Renal Tubular Associate 30779877
Amelogenesis Imperfecta Associate 20938048, 21196691, 21597265, 22243262, 30779877, 31959358, 35181734
Amelogenesis Imperfecta hypomaturation type Associate 19853237, 20938048, 21196691
Amelogenesis Imperfecta Hypomaturation Type Iia3 Associate 30779877
Carcinoma Non Small Cell Lung Associate 37197572
Carcinoma Renal Cell Associate 33234734, 38048211
Colorectal Neoplasms Associate 32749190, 37158531
Developmental Defects of Enamel Associate 35181734
Diabetic Nephropathies Associate 30552240