Gene
Entrez ID Entrez Gene ID - the GENE ID in NCBI Gene database.
2202
Gene name Gene Name - the full gene name approved by the HGNC.
EGF containing fibulin extracellular matrix protein 1
Gene symbol Gene Symbol - the official gene symbol approved by the HGNC.
EFEMP1
Synonyms (NCBI Gene) Gene synonyms aliases
ARCL1D, DHRD, DRAD, FBLN3, FBNL, FIBL-3, GLC1H, MLVT, MTLV, S1-5
Disease Acronyms (UniProt) Disease acronyms from UniProt database
ARCL1D, DHRD, GLC1H
Chromosome Chromosome number
2
Chromosome location Chromosomal Location - indicates the cytogenetic location of the gene or region on the chromosome.
2p16.1
Summary Summary of gene provided in NCBI Entrez Gene.
This gene encodes a member of the fibulin family of extracellular matrix glycoproteins. Like all members of this family, the encoded protein contains tandemly repeated epidermal growth factor-like repeats followed by a C-terminus fibulin-type domain. This
SNPs SNP information provided by dbSNP.
SNP ID Visualize variation Clinical significance Consequence
rs765517862 A>G,T Pathogenic Synonymous variant, coding sequence variant, stop gained
rs1572850869 CATGC>- Pathogenic Coding sequence variant, frameshift variant
rs1572851186 A>G Likely-pathogenic, uncertain-significance Coding sequence variant, missense variant
miRNA miRNA information provided by mirtarbase database.
miRTarBase ID miRNA Experiments Reference
MIRT953659 hsa-miR-101 CLIP-seq
MIRT953660 hsa-miR-1225-5p CLIP-seq
MIRT953661 hsa-miR-1226 CLIP-seq
MIRT953662 hsa-miR-1273e CLIP-seq
MIRT953663 hsa-miR-133a CLIP-seq
Gene ontology (GO) Gene ontology information of associated ontologies with gene provided by GO database.
GO ID Ontology Definition Evidence Reference
GO:0005006 Function Epidermal growth factor-activated receptor activity IDA 19804359
GO:0005154 Function Epidermal growth factor receptor binding IDA 19804359
GO:0005201 Function Extracellular matrix structural constituent RCA 20551380, 25037231, 28675934
GO:0005509 Function Calcium ion binding IEA
GO:0005515 Function Protein binding IPI 12620389, 16189514, 16713569, 18985028, 19275936, 25416956, 25910212, 26871637, 31515488, 32296183, 32814053
Other IDs Other ids provides unique ids of gene in databases such as OMIM, HGNC, ENSEMBLE.
MIM HGNC e!Ensembl
601548 3218 ENSG00000115380
Protein
UniProt ID Q12805
Protein name EGF-containing fibulin-like extracellular matrix protein 1 (Extracellular protein S1-5) (Fibrillin-like protein) (Fibulin-3) (FIBL-3)
Protein function Binds EGFR, the EGF receptor, inducing EGFR autophosphorylation and the activation of downstream signaling pathways. May play a role in cell adhesion and migration. May function as a negative regulator of chondrocyte differentiation. In the olfa
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF07645 EGF_CA 44 85 Calcium-binding EGF domain Domain
PF07645 EGF_CA 173 212 Calcium-binding EGF domain Domain
PF12662 cEGF 234 257 Complement Clr-like EGF-like Domain
PF12662 cEGF 274 297 Complement Clr-like EGF-like Domain
PF07645 EGF_CA 334 381 Calcium-binding EGF domain Domain
Tissue specificity TISSUE SPECIFICITY: In the eye, associated with photoreceptor outer and inner segment regions, the nerve fiber layer, outer nuclear layer and inner and outer plexiform layers of the retina. {ECO:0000269|PubMed:12242346, ECO:0000269|PubMed:20005202}.
Sequence
MLKALFLTMLTLALVKSQDTEETITYTQCTDGYEWDPVRQQCKDIDECDIVPDACKGGMK
CVNHYGGYLCLPKTAQIIVNNEQPQ
QETQPAEGTSGATTGVVAASSMATSGVLPGGGFVA
SAAAVAGPEMQTGRNNFVIRRNPADPQRIPSNPSHRIQCAAGYEQSEHNVCQDIDECTAG
THNCRADQVCINLRGSFACQCPPGYQKRGEQC
VDIDECTIPPYCHQRCVNTPGSFYCQCS
PGFQLAANNYTCVDINE
CDASNQCAQQCYNILGSFICQCNQGYELSSDRLNCEDIDECRT
SSYLCQYQCVNEPGKFSCMCPQGYQVVRSRTCQDINECETTNECREDEMCWNYHGGFRCY
PRNPCQDPYILTPENRCVCPV
SNAMCRELPQSIVYKYMSIRSDRSVPSDIFQIQATTIYA
NTINTFRIKSGNENGEFYLRQTSPVSAMLVLVKSLSGPREHIVDLEMLTVSSIGTFRTSS
VLRLTIIVGPFSF
Sequence length 493
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  Reactome
    Molecules associated with elastic fibres
Associated diseases Disease information provided by ClinVar, GenCC, and GWAS databases.
Causal
Disease term Disease name dbSNP ID References
Adenocarcinoma Adenocarcinoma, Adenocarcinoma, Basal Cell, Adenocarcinoma, Oxyphilic, Adenocarcinoma, Tubular rs121913530, rs886039394, rs121913474 17671114
Breast cancer Malignant neoplasm of breast rs587776547, rs1137887, rs137853007, rs587776650, rs80359351, rs80359714, rs121917783, rs104886456, rs121964878, rs80359874, rs80357868, rs80357508, rs387906843, rs80357569, rs80358158
View all (309 more)
19115204
Breast carcinoma Breast Carcinoma rs80359671, rs11540652, rs28934575, rs28897672, rs137886232, rs193922376, rs80357783, rs80359306, rs80359405, rs80359507, rs80359598, rs80358429, rs397507683, rs397515636, rs80359451
View all (71 more)
19115204
Carcinoma Carcinoma, Carcinoma, Cribriform, Carcinoma, Granular Cell, Carcinoma, Spindle-Cell, Undifferentiated carcinoma rs121912654, rs555607708, rs786202962, rs1564055259 12376462, 17671114
Unknown
Disease term Disease name Evidence References Source
Cutis Laxa cutis laxa, autosomal recessive, type 1d, cutis laxa GenCC
Glaucoma Glaucoma GWAS
Amyotrophic Lateral Sclerosis Amyotrophic Lateral Sclerosis GWAS
Pelvic Organ Prolapse Pelvic Organ Prolapse GWAS
Associations from Text Mining
Disease Name Relationship Type References
Alzheimer Disease Associate 26950848
Amyotrophic Lateral Sclerosis Associate 32792518
Arachnodactyly Associate 38348595
Autism Spectrum Disorder Associate 32393163
Basal Laminar Drusen Associate 27007659
Biliary Atresia Associate 36114336
Blindness Associate 34923728
Breast Neoplasms Stimulate 20132413
Calcinosis Inhibit 29689558
Carcinoma Hepatocellular Inhibit 23936443