Gene
Entrez ID Entrez Gene ID - the GENE ID in NCBI Gene database.
2067
Gene name Gene Name - the full gene name approved by the HGNC.
ERCC excision repair 1, endonuclease non-catalytic subunit
Gene symbol Gene Symbol - the official gene symbol approved by the HGNC.
ERCC1
Synonyms (NCBI Gene) Gene synonyms aliases
COFS4, RAD10, UV20
Disease Acronyms (UniProt) Disease acronyms from UniProt database
COFS4
Chromosome Chromosome number
19
Chromosome location Chromosomal Location - indicates the cytogenetic location of the gene or region on the chromosome.
19q13.32
Summary Summary of gene provided in NCBI Entrez Gene.
The product of this gene functions in the nucleotide excision repair pathway, and is required for the repair of DNA lesions such as those induced by UV light or formed by electrophilic compounds including cisplatin. The encoded protein forms a heterodimer
SNPs SNP information provided by dbSNP.
SNP ID Visualize variation Clinical significance Consequence
rs11615 A>G Drug-response, benign Synonymous variant, coding sequence variant
rs121913027 G>A Pathogenic Coding sequence variant, stop gained
rs121913028 G>A,C Pathogenic Coding sequence variant, missense variant, synonymous variant
rs149666093 G>A,T Likely-pathogenic Missense variant, stop gained, coding sequence variant
rs150584960 C>A,T Likely-pathogenic Missense variant, stop gained, coding sequence variant
miRNA miRNA information provided by mirtarbase database.
miRTarBase ID miRNA Experiments Reference
MIRT052171 hsa-let-7b-5p CLASH 23622248
MIRT038492 hsa-miR-296-3p CLASH 23622248
MIRT685170 hsa-miR-4768-3p HITS-CLIP 23313552
MIRT685169 hsa-miR-4459 HITS-CLIP 23313552
MIRT685168 hsa-miR-4433a-3p HITS-CLIP 23313552
Transcription factors
Transcription factor Regulation Reference
E2F1 Activation 22159227
KAT5 Activation 22159227
Gene ontology (GO) Gene ontology information of associated ontologies with gene provided by GO database.
GO ID Ontology Definition Evidence Reference
GO:0000014 Function Single-stranded DNA endodeoxyribonuclease activity IDA 7559382
GO:0000109 Component Nucleotide-excision repair complex IDA 3290851, 7559382, 8197175
GO:0000110 Component Nucleotide-excision repair factor 1 complex IBA 21873635
GO:0000110 Component Nucleotide-excision repair factor 1 complex IDA 10413517
GO:0000710 Process Meiotic mismatch repair IBA 21873635
Other IDs Other ids provides unique ids of gene in databases such as OMIM, HGNC, ENSEMBLE.
MIM HGNC e!Ensembl
126380 3433 ENSG00000012061
Protein
UniProt ID P07992
Protein name DNA excision repair protein ERCC-1
Protein function [Isoform 1]: Non-catalytic component of a structure-specific DNA repair endonuclease responsible for the 5'-incision during DNA repair. Responsible, in conjunction with SLX4, for the first step in the repair of interstrand cross-links (ICL). Par
PDB 1Z00 , 2A1I , 2A1J , 2JNW , 2JPD , 2MUT , 6SXA , 6SXB
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF03834 Rad10 100 213 Binding domain of DNA repair protein Ercc1 (rad10/Swi10) Family
PF00633 HHH 259 288 Helix-hairpin-helix motif Motif
Sequence
MDPGKDKEGVPQPSGPPARKKFVIPLDEDEVPPGVAKPLFRSTQSLPTVDTSAQAAPQTY
AEYAISQPLEGAGATCPTGSEPLAGETPNQALKPGAKSNSIIVSPRQRGNPVLKFVRNVP
WEFGDVIPDYVLGQSTCALFLSLRYHNLHPDYIHGRLQSLGKNFALRVLLVQVDVKDPQQ
ALKELAKMCILADCTLILAWSPEEAGRYLETYK
AYEQKPADLLMEKLEQDFVSRVTECLT
TVKSVNKTDSQTLLTTFGSLEQLIAASREDLALCPGLGPQKARRLFDVLHEPFLKVP
Sequence length 297
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  KEGG   Reactome
  Platinum drug resistance
Nucleotide excision repair
Fanconi anemia pathway
  HDR through Single Strand Annealing (SSA)
Formation of Incision Complex in GG-NER
Dual Incision in GG-NER
Dual incision in TC-NER
Fanconi Anemia Pathway
Associated diseases Disease information provided by ClinVar, GenCC, and GWAS databases.
Causal
Disease term Disease name dbSNP ID References
Arthrogryposis multiplex congenita Arthrogryposis rs1586285494, rs80358233, rs137853305, rs1559154278, rs398124167, rs398124172, rs587780399, rs786204576, rs786204430, rs769345284, rs749355583, rs793888524, rs793888525, rs878854368, rs555445835
View all (138 more)
Neoplasm Neoplasms, Germ Cell and Embryonal, Neoplasms, Embryonal and Mixed rs137854562, rs137854565, rs137854568, rs137854574, rs121434220, rs121909218, rs121909222, rs587776667, rs606231169, rs587776701, rs121913388, rs137852578, rs137852216, rs121912651, rs28934575
View all (247 more)
19956886
Cataract Cataract rs118203965, rs118203966, rs104893685, rs121908938, rs104894175, rs121909048, rs28937573, rs121909049, rs121909050, rs74315488, rs80358200, rs80358203, rs121434643, rs56141211, rs132630322
View all (150 more)
Cerebrooculofacioskeletal syndrome Cerebrooculofacioskeletal Syndrome 1, CEREBROOCULOFACIOSKELETAL SYNDROME 4 rs121917901, rs758341467, rs121917904, rs1590413260, rs2140538834, rs121913027, rs121913028, rs121913018, rs121913020, rs121913021, rs121913024, rs121913026, rs41556519, rs185142838, rs587778271
View all (20 more)
17273966, 23623389
Unknown
Disease term Disease name Evidence References Source
Nasopharyngeal carcinoma Nasopharyngeal carcinoma These data suggest that KAT7 can contribute NPC cell growth and survival through up-regulation of NPC-essential genes. 20605357 ClinVar, CBGDA
COFS Syndrome COFS syndrome GenCC
Cockayne Syndrome Cockayne syndrome type 2 GenCC
Alzheimer disease Alzheimer disease GWAS
Associations from Text Mining
Disease Name Relationship Type References
Adenocarcinoma Associate 18478337, 19253035, 20332140, 20975603, 22569992, 23470290, 25926247, 28878296
Adenocarcinoma of Lung Associate 19297315, 20003391, 20003463, 21264830, 22415779, 26617762, 28128193, 28181565, 31521181
Adenoma Pleomorphic Associate 26031756
Adrenocortical Carcinoma Associate 29187510
Alzheimer Disease Inhibit 29474873
Alzheimer Disease Associate 32160291, 37751459
Anemia Associate 25881102, 32711417, 39596349
Anthracosis Associate 39283905
Anxiety Associate 34284736
Biliary Tract Neoplasms Associate 19443413