Gene Gene information from NCBI Gene database.
Entrez ID 197358
Gene name NLR family CARD domain containing 3
Gene symbol NLRC3
Synonyms (NCBI Gene)
CLR16.2NOD3
Chromosome 16
Chromosome location 16p13.3
Summary This gene encodes a NOD-like receptor family member. The encoded protein is a cytosolic regulator of innate immunity. This protein directly interacts with stimulator of interferon genes (STING), to prevent its proper trafficking, resulting in disruption o
miRNA miRNA information provided by mirtarbase database.
370
miRTarBase ID miRNA Experiments Reference
MIRT701391 hsa-miR-548c-3p HITS-CLIP 23313552
MIRT701390 hsa-miR-6771-3p HITS-CLIP 23313552
MIRT701389 hsa-miR-4293 HITS-CLIP 23313552
MIRT701388 hsa-miR-3675-3p HITS-CLIP 23313552
MIRT701387 hsa-miR-4684-5p HITS-CLIP 23313552
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
37
GO ID Ontology Definition Evidence Reference
GO:0000166 Function Nucleotide binding IEA
GO:0002683 Process Negative regulation of immune system process IEA
GO:0005515 Function Protein binding IPI 24560620, 25277106
GO:0005524 Function ATP binding IEA
GO:0005737 Component Cytoplasm IDA 15705585, 24560620, 25277106
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
615648 29889 ENSG00000167984
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
Q7RTR2
Protein name NLR family CARD domain-containing protein 3 (CARD15-like protein) (Caterpiller protein 16.2) (CLR16.2) (NACHT, LRR and CARD domains-containing protein 3) (Nucleotide-binding oligomerization domain protein 3)
Protein function Negative regulator of the innate immune response (PubMed:15705585, PubMed:22863753, PubMed:25277106). Attenuates signaling pathways activated by Toll-like receptors (TLRs) and the DNA sensor STING/TMEM173 in response to pathogen-associated molec
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF05729 NACHT 139 305 NACHT domain Domain
PF17779 NOD2_WH 395 453 NOD2 winged helix domain Domain
PF17776 NLRC4_HD2 455 582 NLRC4 helical domain HD2 Domain
PF13516 LRR_6 664 687 Leucine Rich repeat Repeat
PF13516 LRR_6 692 715 Leucine Rich repeat Repeat
PF13516 LRR_6 721 743 Leucine Rich repeat Repeat
PF13516 LRR_6 776 799 Leucine Rich repeat Repeat
PF13516 LRR_6 804 827 Leucine Rich repeat Repeat
PF13516 LRR_6 832 855 Leucine Rich repeat Repeat
PF13516 LRR_6 860 883 Leucine Rich repeat Repeat
PF13516 LRR_6 888 911 Leucine Rich repeat Repeat
PF13516 LRR_6 916 939 Leucine Rich repeat Repeat
PF13516 LRR_6 972 995 Leucine Rich repeat Repeat
PF13516 LRR_6 1000 1023 Leucine Rich repeat Repeat
PF13516 LRR_6 1028 1051 Leucine Rich repeat Repeat
Sequence
MRKQEVRTGREAGQGHGTGSPAEQVKALMDLLAGKGSQGSQAPQALDRTPDAPLGPCSND
SRIQRHRKALLSKVGGGPELGGPWHRLASLLLVEGLTDLQLREHDFTQVEATRGGGHPAR
TVALDRLFLPLSRVSVPPRVSITIGVAGMGKTTLVRHFVRLWAHGQVGKDFSLVLPLTFR
DLNTHEKLCADRLICSVFPHVGEPSLAVAVPARALLILDGLDECRTPLDFSNTVACTDPK
KEIPVDHLITNIIRGNLFPEVSIWITSRPSASGQIPGGLVDRMTEIRGFNEEEIKVCLEQ
MFPED
QALLGWMLSQVQADRALYLMCTVPAFCRLTGMALGHLWRSRTGPQDAELWPPRTL
CELYSWYFRMALSGEGQEKGKASPRIEQVAHGGRKMVGTLGRLAFHGLLKKKYVFYEQDM
KAFGVDLALLQGAPCSCFLQREETLASSVAYCF
THLSLQEFVAAAYYYGASRRAIFDLFT
ESGVSWPRLGFLTHFRSAAQRAMQAEDGRLDVFLRFLSGLLSPRVNALLAGSLLAQGEHQ
AYRTQVAELLQGCLRPDAAVCARAINVLHCLHELQHTELARS
VEEAMESGALARLTGPAH
RAALAYLLQVSDACAQEANLSLSLSQGVLQSLLPQLLYCRKLRLDTNQFQDPVMELLGSV
LSGKDCRIQKISLAENQISNKGAKALARSLLVNRSLTSLDLRGNSIGPQGAKALADALKI
NRTLTSLSLQGNTVRDDGARSMAEALASNRTLSMLHLQKNSIGPMGAQRMADALKQNRSL
KELMFSSNSIGDGGAKALA
EALKVNQGLESLDLQSNSISDAGVAALMGALCTNQTLLSLS
LRENSISPEGAQAIA
HALCANSTLKNLDLTANLLHDQGARAIAVAVRENRTLTSLHLQWN
FIQAGAAQALG
QALQLNRSLTSLDLQENAIGDDGACAVARALKVNTALTALYLQVASIGA
SGAQVLGEALAVNRTLEILDLRGNAIGVAGAKALANALKVNSSLRRLNLQENSLGMDGAI
CIA
TALSGNHRLQHINLQGNHIGDSGARMISEAIKTNAPTCTVEM
Sequence length 1065
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  Reactome
    IRF3-mediated induction of type I IFN
Associated diseases Disease associations from ClinVar categorized as Causal (Pathogenic/Likely Pathogenic) or Unknown.
4
Unknown Diseases with uncertain, conflicting, or no pathogenic evidence in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession
Cervical cancer Likely benign rs146476058 RCV005929402
Gastric cancer Likely benign rs146476058 RCV005929403
Malignant tumor of urinary bladder Likely benign rs146476058 RCV005929401
Thyroid cancer, nonmedullary, 1 Likely benign rs146476058 RCV005929404
Associations from Text MiningDisease associations identified through Pubtator
Disease Name Relationship Type References
Adenocarcinoma of Lung Inhibit 36808166
Alzheimer Disease Associate 35173266
Carcinogenesis Associate 36808166
Carcinoma Hepatocellular Associate 32148377
Cartilage Diseases Associate 37312878
Colorectal Neoplasms Inhibit 26378020
Common Variable Immunodeficiency Associate 32047491
Dementia Associate 35173266
Granulomatosis with Polyangiitis Associate 21412229
Inflammation Associate 26378020, 35173266, 36808166, 37312878