Gene
Entrez ID Entrez Gene ID - the GENE ID in NCBI Gene database.
1942
Gene name Gene Name - the full gene name approved by the HGNC.
Ephrin A1
Gene symbol Gene Symbol - the official gene symbol approved by the HGNC.
EFNA1
Synonyms (NCBI Gene) Gene synonyms aliases
B61, ECKLG, EFL1, EPLG1, GMAN, LERK-1, LERK1, TNFAIP4
Chromosome Chromosome number
1
Chromosome location Chromosomal Location - indicates the cytogenetic location of the gene or region on the chromosome.
1q22
Summary Summary of gene provided in NCBI Entrez Gene.
This gene encodes a member of the ephrin (EPH) family. The ephrins and EPH-related receptors comprise the largest subfamily of receptor protein-tyrosine kinases and have been implicated in mediating developmental events, especially in the nervous system a
miRNA miRNA information provided by mirtarbase database.
miRTarBase ID miRNA Experiments Reference
MIRT001058 hsa-miR-218-5p qRT-PCR, Western blot 17998940
MIRT016724 hsa-miR-335-5p Microarray 18185580
MIRT021322 hsa-miR-9-5p Microarray 17612493
MIRT022145 hsa-miR-124-3p Microarray 18668037
MIRT053497 hsa-miR-200c-3p Luciferase reporter assay, qRT-PCR 23065816
Gene ontology (GO) Gene ontology information of associated ontologies with gene provided by GO database.
GO ID Ontology Definition Evidence Reference
GO:0000122 Process Negative regulation of transcription by RNA polymerase II IEA
GO:0000122 Process Negative regulation of transcription by RNA polymerase II ISS
GO:0001525 Process Angiogenesis IEA
GO:0003180 Process Aortic valve morphogenesis IEA
GO:0003180 Process Aortic valve morphogenesis ISS
Other IDs Other ids provides unique ids of gene in databases such as OMIM, HGNC, ENSEMBLE.
MIM HGNC e!Ensembl
191164 3221 ENSG00000169242
Protein
UniProt ID P20827
Protein name Ephrin-A1 (EPH-related receptor tyrosine kinase ligand 1) (LERK-1) (Immediate early response protein B61) (Tumor necrosis factor alpha-induced protein 4) (TNF alpha-induced protein 4) [Cleaved into: Ephrin-A1, secreted form]
Protein function Cell surface GPI-bound ligand for Eph receptors, a family of receptor tyrosine kinases which are crucial for migration, repulsion and adhesion during neuronal, vascular and epithelial development. Binds promiscuously Eph receptors residing on ad
PDB 3CZU , 3HEI , 3MBW
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF00812 Ephrin 18 147 Ephrin Domain
Tissue specificity TISSUE SPECIFICITY: Brain. Down-regulated in primary glioma tissues compared to the normal tissues. The soluble monomeric form is expressed in the glioblastoma multiforme (GBM) and breast cancer cells (at protein level). {ECO:0000269|PubMed:17332925}.
Sequence
Sequence length 205
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  KEGG   Reactome
  MAPK signaling pathway
Ras signaling pathway
Rap1 signaling pathway
PI3K-Akt signaling pathway
Axon guidance
MicroRNAs in cancer
  EPH-Ephrin signaling
EPHA-mediated growth cone collapse
EPH-ephrin mediated repulsion of cells
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Associated diseases Disease associations categorized as Causal (pathogenic variants), Unknown (uncertain genetic evidence), or Text Mining (literature-based associations)
Unknown Includes: (1) ClinVar NON-pathogenic variants (Uncertain, Benign, Conflicting, VUS), (2) GenCC associations, (3) GWAS associations, (4) CBGDA evidence-based associations. NOTE: Diseases with pathogenic evidence are excluded to avoid conflicts.
Disease merge term Disease name Evidence References Source
Prostate cancer Prostate cancer N/A N/A GWAS
Associations from Text Mining Disease associations identified through Pubtator
Disease Name Relationship Type References
Adenocarcinoma Associate 22853000
Adenocarcinoma Stimulate 34087884
Adenocarcinoma of Lung Associate 22807579
Allergic Fungal Sinusitis Associate 34975898
Breast Neoplasms Inhibit 15649254
Breast Neoplasms Associate 18794797, 21935409, 22261062, 26861043, 33977106
Carcinoma Hepatocellular Associate 15888795
Carcinoma Non Small Cell Lung Associate 22853000, 24293999
Carcinoma Renal Cell Associate 25025847
Carcinoma Squamous Cell Associate 17158642, 18566674, 24040255