Gene Gene information from NCBI Gene database.
Entrez ID 166378
Gene name AAA ATPase AFG2A
Gene symbol AFG2A
Synonyms (NCBI Gene)
AFG2EHLMRSNEDHSBSPAFSPATA5
Chromosome 4
Chromosome location 4q28.1
SNPs SNP information provided by dbSNP.
33
SNP ID Visualize variation Clinical significance Consequence
rs139834687 C>A,T Pathogenic, likely-benign Stop gained, coding sequence variant, synonymous variant, non coding transcript variant
rs141576468 G>A Uncertain-significance, likely-pathogenic Missense variant, coding sequence variant, non coding transcript variant, genic downstream transcript variant
rs143384152 A>G Conflicting-interpretations-of-pathogenicity Missense variant, non coding transcript variant, coding sequence variant
rs149688478 G>A Pathogenic Splice donor variant
rs375343753 G>C Uncertain-significance, conflicting-interpretations-of-pathogenicity Coding sequence variant, missense variant, non coding transcript variant, genic downstream transcript variant
miRNA miRNA information provided by mirtarbase database.
1324
miRTarBase ID miRNA Experiments Reference
MIRT031674 hsa-miR-16-5p Proteomics 18668040
MIRT629913 hsa-miR-383-3p HITS-CLIP 23824327
MIRT629912 hsa-miR-125a-3p HITS-CLIP 23824327
MIRT629911 hsa-miR-764 HITS-CLIP 23824327
MIRT629910 hsa-miR-3934-5p HITS-CLIP 23824327
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
22
GO ID Ontology Definition Evidence Reference
GO:0000166 Function Nucleotide binding IEA
GO:0005515 Function Protein binding IPI 33961781, 35354024, 38554706
GO:0005524 Function ATP binding IEA
GO:0005737 Component Cytoplasm IBA
GO:0005737 Component Cytoplasm IDA 18445686
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
613940 18119 ENSG00000145375
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
Q8NB90
Protein name ATPase family gene 2 protein homolog A (EC 3.6.4.10) (AFG2 AAA ATPase homolog A) (Ribosome biogenesis protein SPATA5) (Spermatogenesis-associated factor protein) (Spermatogenesis-associated protein 5)
Protein function ATP-dependent chaperone part of the 55LCC heterohexameric ATPase complex which is chromatin-associated and promotes replisome proteostasis to maintain replication fork progression and genome stability. Required for replication fork progression,
PDB 8RHN
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF00004 AAA 390 523 ATPase family associated with various cellular activities (AAA) Domain
PF17862 AAA_lid_3 547 603 AAA+ lid domain Domain
PF00004 AAA 664 796 ATPase family associated with various cellular activities (AAA) Domain
PF17862 AAA_lid_3 818 864 AAA+ lid domain Domain
Sequence
MSSKKNRKRLNQSAENGSSLPSAASSCAEARAPSAGSDFAATSGTLTVTNLLEKVDDKIP
KTFQNSLIHLGLNTMKSANICIGRPVLLTSLNGKQEVYTAWPMAGFPGGKVGLSEMAQKN
VGVRPGDAIQVQPLVGAVLQAEEMDVALSDKDMEINEEELTGCILRKLDGKIVLPGNFLY
CTFYGRPYKLQVLRVKGADGMILGGPQSDSDTDAQRMAFEQSSMETSSLELSLQLSQLDL
EDTQIPTSRSTPYKPIDDRITNKASDVLLDVTQSPGDGSGLMLEEVTGLKCNFESAREGN
EQLTEEERLLKFSIGAKCNTDTFYFISSTTRVNFTEIDKNSKEQDNQFKVTYDMIGGLSS
QLKAIREIIELPLKQPELFKSYGIPAPRGVLLYGPPGTGKTMIARAVANEVGAYVSVING
PEIISKFYGETEAKLRQIFAEATLRHPSIIFIDELDALCPKREGAQNEVEKRVVASLLTL
MDGIGSEVSEGQVLVLGATNRPHALDAALRRPGRFDKEIEIGV
PNAQDRLDILQKLLRRV
PHLLTEAELLQLANSAHGYVGADLKVLCNEAGLCALRRILKKQPNLPDVKVAGLVKITLK
DFL
QAMNDIRPSAMREIAIDVPNVSWSDIGGLESIKLKLEQAVEWPLKHPESFIRMGIQP
PKGVLLYGPPGCSKTMIAKALANESGLNFLAIKGPELMNKYVGESERAVRETFRKARAVA
PSIIFFDELDALAVERGSSLGAGNVADRVLAQLLTEMDGIEQLKDVTILAATNRPDRIDK
ALMRPGRIDRIIYVPL
PDAATRREIFKLQFHSMPVSNEVDLDELILQTDAYSGAEIVAVC
REAALLALEEDIQANLIMKRHFTQ
ALSTVTPRIPESLRRFYEDYQEKSGLHTL
Sequence length 893
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  KEGG 
  Ribosome biogenesis in eukaryotes  
Associated diseases Disease associations from ClinVar categorized as Causal (Pathogenic/Likely Pathogenic) or Unknown.
691
Causal Diseases associated with Pathogenic or Likely Pathogenic variants in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession
AFG2A-related disorder Likely pathogenic; Pathogenic rs1423563495, rs879782394 RCV003402260
RCV003398959
Familial cancer of breast Pathogenic rs149688478 RCV005892208
Microcephaly-intellectual disability-sensorineural hearing loss-epilepsy-abnormal muscle tone syndrome Pathogenic; Likely pathogenic rs1732760873, rs1553969639, rs1408362205, rs2125739189, rs78047425, rs2125831782, rs1200823602, rs373156651, rs539850739, rs767185543, rs1730786293, rs777112022, rs149688478, rs1371104950, rs751345585
View all (60 more)
RCV001332950
RCV001361612
RCV001367874
RCV001378442
RCV001379198
RCV001377853
RCV001381917
RCV001388403
RCV001806378
RCV001836631
RCV001842258
RCV001991720
RCV001999891
RCV001953338
RCV001994484
RCV001949005
RCV001963900
RCV002036354
RCV001953590
RCV002227390
RCV002227392
RCV003095971
RCV002633494
RCV000698542
RCV000192647
RCV000193200
RCV000195144
RCV001029814
RCV001047626
RCV001939361
RCV000193832
RCV000194235
RCV002715504
RCV002721263
RCV000702568
RCV000578291
RCV001383408
RCV002923091
RCV003014260
RCV003022563
RCV003042666
RCV003043715
RCV003048097
RCV003326665
RCV002500962
RCV003990703
RCV004526522
RCV001238772
RCV000578372
RCV000578452
RCV000578367
RCV001382851
RCV000652803
RCV001055056
RCV000688722
RCV000689594
RCV000697780
RCV000808086
RCV000806467
RCV000824984
RCV001047627
RCV001040838
RCV001061998
RCV001071943
RCV001040289
RCV001037342
RCV001043912
RCV001203983
RCV001217459
RCV001221253
RCV001219496
RCV001215493
RCV001223488
RCV001208165
RCV001202567
RCV001244845
RCV001264811
RCV001283759
Neurodevelopmental disorder Pathogenic; Likely pathogenic rs745858366, rs1394246954 RCV003389047
RCV003389216
Unknown Diseases with uncertain, conflicting, or no pathogenic evidence in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession
Acute myeloid leukemia Benign rs17006342 RCV005897166
Cervical cancer Benign rs17006342 RCV005897167
Colon adenocarcinoma Benign rs17006342 RCV005897165
Colorectal cancer Benign rs17006342 RCV005897169