Gene
Entrez ID Entrez Gene ID - the GENE ID in NCBI Gene database.
1509
Gene name Gene Name - the full gene name approved by the HGNC.
Cathepsin D
Gene symbol Gene Symbol - the official gene symbol approved by the HGNC.
CTSD
Synonyms (NCBI Gene) Gene synonyms aliases
CLN10, CPSD, HEL-S-130P
Disease Acronyms (UniProt) Disease acronyms from UniProt database
CLN10
Chromosome Chromosome number
11
Chromosome location Chromosomal Location - indicates the cytogenetic location of the gene or region on the chromosome.
11p15.5
Summary Summary of gene provided in NCBI Entrez Gene.
This gene encodes a member of the A1 family of peptidases. The encoded preproprotein is proteolytically processed to generate multiple protein products. These products include the cathepsin D light and heavy chains, which heterodimerize to form the mature
SNPs SNP information provided by dbSNP.
SNP ID Visualize variation Clinical significance Consequence
rs121912789 A>T Pathogenic Coding sequence variant, missense variant
rs121912790 C>G Pathogenic Coding sequence variant, missense variant
rs140238987 C>A,G,T Likely-benign, conflicting-interpretations-of-pathogenicity, benign, uncertain-significance Coding sequence variant, synonymous variant
rs140563067 C>T Conflicting-interpretations-of-pathogenicity Coding sequence variant, synonymous variant
rs147800688 C>T Uncertain-significance, conflicting-interpretations-of-pathogenicity Missense variant, coding sequence variant
miRNA miRNA information provided by mirtarbase database.
miRTarBase ID miRNA Experiments Reference
MIRT018513 hsa-miR-335-5p Microarray 18185580
MIRT029858 hsa-miR-26b-5p Microarray 19088304
MIRT051277 hsa-miR-16-5p CLASH 23622248
MIRT042779 hsa-miR-339-5p CLASH 23622248
MIRT042362 hsa-miR-484 CLASH 23622248
Transcription factors
Transcription factor Regulation Reference
ARNT Unknown 9611253
BRCA1 Repression 11244506
ESR1 Unknown 10037443;19569049
ESR2 Unknown 10037443
MYCN Activation 18566016
Gene ontology (GO) Gene ontology information of associated ontologies with gene provided by GO database.
GO ID Ontology Definition Evidence Reference
GO:0004190 Function Aspartic-type endopeptidase activity IEA
GO:0005515 Function Protein binding IPI 17112520, 27333034, 28493053, 32814053
GO:0005576 Component Extracellular region HDA 27068509
GO:0005576 Component Extracellular region NAS 14718574
GO:0005576 Component Extracellular region TAS
Other IDs Other ids provides unique ids of gene in databases such as OMIM, HGNC, ENSEMBLE.
MIM HGNC e!Ensembl
116840 2529 ENSG00000117984
Protein
UniProt ID P07339
Protein name Cathepsin D (EC 3.4.23.5) [Cleaved into: Cathepsin D light chain; Cathepsin D heavy chain]
Protein function Acid protease active in intracellular protein breakdown. Plays a role in APP processing following cleavage and activation by ADAM30 which leads to APP degradation (PubMed:27333034). Involved in the pathogenesis of several diseases such as breast
PDB 1LYA , 1LYB , 1LYW , 4OBZ , 4OC6 , 4OD9
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF07966 A1_Propeptide 21 50 A1 Propeptide Motif
PF00026 Asp 78 409 Eukaryotic aspartyl protease Family
Tissue specificity TISSUE SPECIFICITY: Expressed in the aorta extracellular space (at protein level) (PubMed:20551380). Expressed in liver (at protein level) (PubMed:1426530). {ECO:0000269|PubMed:1426530, ECO:0000269|PubMed:20551380}.
Sequence
Sequence length 412
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  KEGG   Reactome
  Sphingolipid signaling pathway
Autophagy - animal
Lysosome
Apoptosis
Estrogen signaling pathway
Tuberculosis
Diabetic cardiomyopathy
  Collagen degradation
Metabolism of Angiotensinogen to Angiotensins
MHC class II antigen presentation
Neutrophil degranulation
Estrogen-dependent gene expression
Associated diseases Disease information provided by ClinVar, GenCC, and GWAS databases.
Causal
Disease term Disease name dbSNP ID References
Amyotrophic lateral sclerosis Amyotrophic Lateral Sclerosis, Familial rs267607084, rs312262720, rs312262752, rs121908287, rs121908288, rs29001584, rs28941475, rs121434378, rs386134173, rs386134174, rs80356730, rs80356727, rs4884357, rs80356717, rs80356733
View all (171 more)
11796754
Arthritis Degenerative polyarthritis rs1594890601, rs1594882933, rs184370809, rs776489319, rs1594883470 18784066
Mental retardation Severe intellectual disability rs5742905, rs267607136, rs267607137, rs2131714307, rs267607038, rs267607042, rs80338685, rs137853127, rs80338815, rs28940893, rs387906309, rs121908096, rs121908099, rs587784365, rs121918315
View all (1024 more)
Kidney disease Kidney Diseases rs74315342, rs749740335, rs757649673, rs112417755, rs35138315 15213268
Unknown
Disease term Disease name Evidence References Source
Chromophobe carcinoma Chromophobe Renal Cell Carcinoma 15108329 ClinVar
Associations from Text Mining
Disease Name Relationship Type References
AA amyloidosis Associate 7523115
Adenocarcinoma Associate 17522418
Adenocarcinoma of Lung Associate 22761399
Adenoma Associate 12408466
Alzheimer Disease Associate 15907478, 16417614, 16543533, 18426579, 24731980, 25756588, 29359159, 30037983, 30192871, 31936569, 32323319, 36448495, 40329537, 7523115, 8034590
View all (2 more)
Alzheimer Disease Stimulate 7695914
Aneuploidy Associate 2296271
Anti Glomerular Basement Membrane Disease Associate 18216317
Aortic Aneurysm Abdominal Associate 22804761, 24833013
Arthritis Gouty Stimulate 37069596