Gene
Entrez ID Entrez Gene ID - the GENE ID in NCBI Gene database.
140628
Gene name Gene Name - the full gene name approved by the HGNC.
GATA binding protein 5
Gene symbol Gene Symbol - the official gene symbol approved by the HGNC.
GATA5
Synonyms (NCBI Gene) Gene synonyms aliases
CHTD5, GATAS, bB379O24.1
Disease Acronyms (UniProt) Disease acronyms from UniProt database
CHTD5
Chromosome Chromosome number
20
Chromosome location Chromosomal Location - indicates the cytogenetic location of the gene or region on the chromosome.
20q13.33
Summary Summary of gene provided in NCBI Entrez Gene.
The protein encoded by this gene is a transcription factor that contains two GATA-type zinc fingers. The encoded protein is known to bind to hepatocyte nuclear factor-1alpha (HNF-1alpha), and this interaction is essential for cooperative activation of the
SNPs SNP information provided by dbSNP.
SNP ID Visualize variation Clinical significance Consequence
rs782051102 A>G Pathogenic Missense variant, coding sequence variant
rs782773387 C>G Likely-pathogenic Missense variant, coding sequence variant
rs1555896778 A>C Pathogenic Coding sequence variant, missense variant
rs1555896779 G>C Pathogenic Coding sequence variant, missense variant
rs1555897088 A>C Pathogenic Coding sequence variant, missense variant
miRNA miRNA information provided by mirtarbase database.
miRTarBase ID miRNA Experiments Reference
MIRT018574 hsa-miR-335-5p Microarray 18185580
MIRT1012726 hsa-miR-1293 CLIP-seq
MIRT1012727 hsa-miR-3607-5p CLIP-seq
MIRT1012728 hsa-miR-3622a-5p CLIP-seq
MIRT1012729 hsa-miR-3689d CLIP-seq
Transcription factors
Transcription factor Regulation Reference
USF1 Activation 22625849
Gene ontology (GO) Gene ontology information of associated ontologies with gene provided by GO database.
GO ID Ontology Definition Evidence Reference
GO:0000785 Component Chromatin ISA
GO:0000785 Component Chromatin ISS
GO:0000976 Function Transcription regulatory region sequence-specific DNA binding IDA 9566909
GO:0000978 Function RNA polymerase II cis-regulatory region sequence-specific DNA binding IBA 21873635
GO:0000981 Function DNA-binding transcription factor activity, RNA polymerase II-specific IBA 21873635
Other IDs Other ids provides unique ids of gene in databases such as OMIM, HGNC, ENSEMBLE.
MIM HGNC e!Ensembl
611496 15802 ENSG00000130700
Protein
UniProt ID Q9BWX5
Protein name Transcription factor GATA-5 (GATA-binding factor 5)
Protein function Transcription factor required during cardiovascular development (PubMed:23289003). Plays an important role in the transcriptional program(s) that underlies smooth muscle cell diversity (By similarity). Binds to the functionally important CEF-1 n
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF05349 GATA-N 1 176 GATA-type transcription activator, N-terminal Family
PF00320 GATA 189 223 GATA zinc finger Domain
PF00320 GATA 243 277 GATA zinc finger Domain
Sequence
Sequence length 397
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  Reactome
    Factors involved in megakaryocyte development and platelet production
Associated diseases Disease information provided by ClinVar, GenCC, and GWAS databases.
Causal
Disease term Disease name dbSNP ID References
Aortic valve calcification Aortic valve calcification, Aortic Valve Disease 1 rs41309764, rs41309766, rs863224901, rs1057515423, rs1057515422, rs1057518661, rs1554826746, rs766692577, rs1567092020, rs900988907 24638895
Aortic valve disease Aortic valve disorder rs104894378, rs104894382, rs387907283, rs863223788, rs863223786, rs863223777, rs878853750, rs886041247, rs1057516042, rs1057520136, rs863223776, rs1555226420, rs1060503154, rs1555225344, rs1555225989
View all (18 more)
24638895
Atrial fibrillation Atrial Fibrillation, ATRIAL FIBRILLATION, FAMILIAL, 1 (disorder), Familial atrial fibrillation rs120074192, rs121908590, rs121908593, rs121434558, rs587776851, rs387906612, rs387906613, rs387906614, rs387906615, rs199472687, rs199472705, rs199473324, rs587777336, rs587777339, rs587777557
View all (6 more)
23295592, 23175127, 22483626
Atrial septal defect Atrial Septal Defects rs137852951, rs137852953, rs137852955, rs267607106, rs104893900, rs104893901, rs104893903, rs606231358, rs606231359, rs137852683, rs606231360, rs104893907, rs104894073, rs1585703301, rs104894074
View all (25 more)
Unknown
Disease term Disease name Evidence References Source
Tetralogy of Fallot tetralogy of fallot GenCC
Atrial Fibrillation familial atrial fibrillation GenCC
Prostate cancer Prostate cancer Together, these results show that PRRX2 is an oncogene and might play a role in the aggressiveness of PC within the DNPC population. GWAS, CBGDA
Associations from Text Mining
Disease Name Relationship Type References
Adenocarcinoma Associate 22028801
Adenocarcinoma of Lung Inhibit 35040754
Adenoma Associate 21154739, 25759530
Aortic Coarctation Associate 24796370
Atrial Fibrillation Associate 23295592
Atrioventricular Septal Defect Associate 23040494
Bicuspid Aortic Valve Disease Associate 24796370, 25260786, 34461831
Carcinogenesis Associate 17912029, 20222162, 23736679
Carcinoma Hepatocellular Inhibit 30672133
Carcinoma Renal Cell Associate 24533449, 24549248, 36961416