Gene Gene information from NCBI Gene database.
Entrez ID 1290
Gene name Collagen type V alpha 2 chain
Gene symbol COL5A2
Synonyms (NCBI Gene)
EDSCEDSCL2
Chromosome 2
Chromosome location 2q32.2
Summary This gene encodes an alpha chain for one of the low abundance fibrillar collagens. Fibrillar collagen molecules are trimers that can be composed of one or more types of alpha chains. Type V collagen is found in tissues containing type I collagen and appea
SNPs SNP information provided by dbSNP.
42
SNP ID Visualize variation Clinical significance Consequence
rs121912930 C>G Pathogenic Coding sequence variant, missense variant
rs139189200 G>A Conflicting-interpretations-of-pathogenicity, likely-benign Coding sequence variant, missense variant
rs139656817 A>G Conflicting-interpretations-of-pathogenicity, likely-benign Coding sequence variant, synonymous variant
rs140609193 T>G Conflicting-interpretations-of-pathogenicity, likely-benign Coding sequence variant, synonymous variant
rs140952583 T>C Conflicting-interpretations-of-pathogenicity, likely-benign Coding sequence variant, missense variant
miRNA miRNA information provided by mirtarbase database.
645
miRTarBase ID miRNA Experiments Reference
MIRT030666 hsa-miR-21-5p Microarray 18591254
MIRT046753 hsa-miR-222-3p CLASH 23622248
MIRT053646 hsa-miR-143-3p Microarray 22942087
MIRT437545 hsa-miR-29a-3p Luciferase reporter assay 22745231
MIRT437552 hsa-miR-29b-3p Luciferase reporter assay 22745231
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
33
GO ID Ontology Definition Evidence Reference
GO:0001501 Process Skeletal system development IEA
GO:0005201 Function Extracellular matrix structural constituent IEA
GO:0005576 Component Extracellular region IEA
GO:0005576 Component Extracellular region TAS
GO:0005581 Component Collagen trimer IEA
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
120190 2210 ENSG00000204262
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
P05997
Protein name Collagen alpha-2(V) chain
Protein function Type V collagen is a member of group I collagen (fibrillar forming collagen). It is a minor connective tissue component of nearly ubiquitous distribution. Type V collagen binds to DNA, heparan sulfate, thrombospondin, heparin, and insulin. Type
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF00093 VWC 41 96 von Willebrand factor type C domain Family
PF01391 Collagen 125 187 Collagen triple helix repeat (20 copies) Repeat
PF01391 Collagen 209 272 Collagen triple helix repeat (20 copies) Repeat
PF01391 Collagen 834 904 Collagen triple helix repeat (20 copies) Repeat
PF01391 Collagen 1110 1180 Collagen triple helix repeat (20 copies) Repeat
PF01391 Collagen 1170 1232 Collagen triple helix repeat (20 copies) Repeat
PF01410 COLFI 1264 1498 Fibrillar collagen C-terminal domain Family
Sequence
MMANWAEARPLLILIVLLGQFVSIKAQEEDEDEGYGEEIACTQNGQMYLNRDIWKPAPCQ
ICVCDNGAILCDKIECQDVLDCADPVTPPGECCPVC
SQTPGGGNTNFGRGRKGQKGEPGL
VPVVTGIRGRPGPAGPPGSQGPRGERGPKGRPGPRGPQGIDGEPGVPGQPGAPGPPGHPS
HPGPDGL
SRPFSAQMAGLDEKSGLGSQVGLMPGSVGPVGPRGPQGLQGQQGGAGPTGPPG
EPGDPGPMGPIGSRGPEGPPGKPGEDGEPGRN
GNPGEVGFAGSPGARGFPGAPGLPGLKG
HRGHKGLEGPKGEVGAPGSKGEAGPTGPMGAMGPLGPRGMPGERGRLGPQGAPGQRGAHG
MPGKPGPMGPLGIPGSSGFPGNPGMKGEAGPTGARGPEGPQGQRGETGPPGPVGSPGLPG
AIGTDGTPGAKGPTGSPGTSGPPGSAGPPGSPGPQGSTGPQGIRGQPGDPGVPGFKGEAG
PKGEPGPHGIQGPIGPPGEEGKRGPRGDPGTVGPPGPVGERGAPGNRGFPGSDGLPGPKG
AQGERGPVGSSGPKGSQGDPGRPGEPGLPGARGLTGNPGVQGPEGKLGPLGAPGEDGRPG
PPGSIGIRGQPGSMGLPGPKGSSGDPGKPGEAGNAGVPGQRGAPGKDGEVGPSGPVGPPG
LAGERGEQGPPGPTGFQGLPGPPGPPGEGGKPGDQGVPGDPGAVGPLGPRGERGNPGERG
EPGITGLPGEKGMAGGHGPDGPKGSPGPSGTPGDTGPPGLQGMPGERGIAGTPGPKGDRG
GIGEKGAEGTAGNDGARGLPGPLGPPGPAGPTGEKGEPGPRGLVGPPGSRGNPGSRGENG
PTGAVGFAGPQGPDGQPGVKGEPGEPGQKGDAGSPGPQGLAGSPGPHGPNGVPGLKGGRG
TQGP
PGATGFPGSAGRVGPPGPAGAPGPAGPLGEPGKEGPPGLRGDPGSHGRVGDRGPAG
PPGGPGDKGDPGEDGQPGPDGPPGPAGTTGQRGIVGMPGQRGERGMPGLPGPAGTPGKVG
PTGATGDKGPPGPVGPPGSNGPVGEPGPEGPAGNDGTPGRDGAVGERGDRGDPGPAGLPG
SQGAPGTPGPVGAPGDAGQRGDPGSRGPIGPPGRAGKRGLPGPQGPRGDKGDHGDRGDRG
QKGHRGFTGLQGLPGPPGPNGEQGSAGIP
GPFGPRGPPGPVGPSGKEGNPGPLGPIGPPG
VRGSVGEAGPEGPPGEPGPPGPPGPPGHLTAA
LGDIMGHYDESMPDPLPEFTEDQAAPDD
KNKTDPGVHATLKSLSSQIETMRSPDGSKKHPARTCDDLKLCHSAKQSGEYWIDPNQGSV
EDAIKVYCNMETGETCISANPSSVPRKTWWASKSPDNKPVWYGLDMNRGSQFAYGDHQSP
NTAITQMTFLRLLSKEASQNITYICKNSVGYMDDQAKNLKKAVVLKGANDLDIKAEGNIR
FRYIVLQDTCSKRNGNVGKTVFEYRTQNVARLPIIDLAPVDVGGTDQEFGVEIGPVCF
V
Sequence length 1499
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  KEGG  Reactome
  Cytoskeleton in muscle cells
Protein digestion and absorption
  Collagen degradation
Extracellular matrix organization
Collagen biosynthesis and modifying enzymes
Signaling by PDGF
Assembly of collagen fibrils and other multimeric structures
Integrin cell surface interactions
Non-integrin membrane-ECM interactions
ECM proteoglycans
NCAM1 interactions
MET activates PTK2 signaling
Collagen chain trimerization
Associated diseases Disease associations from ClinVar categorized as Causal (Pathogenic/Likely Pathogenic) or Unknown.
2568
Causal Diseases associated with Pathogenic or Likely Pathogenic variants in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession
COL5A2-related disorder Likely pathogenic rs2469306058 RCV003404181
Ehlers-Danlos syndrome Likely pathogenic rs2469261124 RCV003327323
Ehlers-Danlos syndrome, classic type Pathogenic; Likely pathogenic rs863223491, rs786205103, rs786205104, rs121912930, rs1553514506, rs1553512393, rs1553513971, rs1553515517, rs1685782021, rs1686209873 RCV000549387
RCV000018736
RCV000018737
RCV000018738
RCV000609676
RCV000615676
RCV000604241
RCV000610100
RCV001069869
RCV001071015
Ehlers-Danlos syndrome, classic type, 1 Pathogenic; Likely pathogenic rs2105686869, rs2105632746, rs2105686874, rs2105579086, rs2469307907, rs1686383386, rs2469246822, rs863223491, rs2469314500, rs2469306279, rs2469294833, rs2469279533, rs2469259225, rs754843093, rs121912930
View all (8 more)
RCV001994802
RCV001993203
RCV001962944
RCV002040312
RCV002815538
RCV002833128
RCV002881027
RCV002229088
RCV003759775
RCV003594887
RCV003595499
RCV003593483
RCV003594555
RCV003760951
RCV002513108
RCV002233904
RCV002234439
RCV002232865
RCV002232817
RCV002234097
RCV002235055
RCV002234235
RCV002240565
Unknown Diseases with uncertain, conflicting, or no pathogenic evidence in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession
Abnormal bleeding Conflicting classifications of pathogenicity; Uncertain significance rs140952583, rs747843876 RCV001270524
RCV001270557
Acute myeloid leukemia Benign; Likely benign rs11186 RCV005896016
Cardiovascular phenotype Conflicting classifications of pathogenicity; Uncertain significance rs772811492, rs372226064 RCV005404614
RCV000617223
Cervical cancer Likely benign rs375110673, rs760353505 RCV005912763
RCV005922885
Associations from Text MiningDisease associations identified through Pubtator
Disease Name Relationship Type References
Adenocarcinoma Associate 27513329, 36452120
Adenocarcinoma of Lung Associate 32819300, 34419075, 35238419
Aneurysm Associate 26918470, 31538843
Aortic Dissection Associate 20648054, 28855619
Arnold Chiari Malformation Associate 33974636
Arthritis Rheumatoid Associate 34766472
Autistic Disorder Associate 35964930
Brain Neoplasms Associate 31888563
Breast Neoplasms Associate 34541602, 35741056
Buschke Ollendorff syndrome Associate 22132895