Gene
Entrez ID Entrez Gene ID - the GENE ID in NCBI Gene database.
1161
Gene name Gene Name - the full gene name approved by the HGNC.
ERCC excision repair 8, CSA ubiquitin ligase complex subunit
Gene symbol Gene Symbol - the official gene symbol approved by the HGNC.
ERCC8
Synonyms (NCBI Gene) Gene synonyms aliases
CKN1, CSA, UVSS2
Disease Acronyms (UniProt) Disease acronyms from UniProt database
CSA, UVSS2
Chromosome Chromosome number
5
Chromosome location Chromosomal Location - indicates the cytogenetic location of the gene or region on the chromosome.
5q12.1
Summary Summary of gene provided in NCBI Entrez Gene.
This gene encodes a WD repeat protein, which interacts with Cockayne syndrome type B (CSB) protein and with p44 protein, a subunit of the RNA polymerase II transcription factor IIH. Mutations in this gene have been identified in patients with hereditary d
SNPs SNP information provided by dbSNP.
SNP ID Visualize variation Clinical significance Consequence
rs61754098 G>T Uncertain-significance, likely-benign, conflicting-interpretations-of-pathogenicity Genic downstream transcript variant, coding sequence variant, missense variant
rs121434323 G>C,T Pathogenic Stop gained, coding sequence variant, genic downstream transcript variant
rs121434325 G>A Uncertain-significance, likely-pathogenic Coding sequence variant, intron variant, missense variant
rs148393161 C>T Likely-pathogenic Coding sequence variant, intron variant, missense variant
rs150727525 C>G,T Conflicting-interpretations-of-pathogenicity Coding sequence variant, missense variant, genic downstream transcript variant
miRNA miRNA information provided by mirtarbase database.
miRTarBase ID miRNA Experiments Reference
MIRT005022 hsa-miR-521 Western blot 18668526
MIRT029207 hsa-miR-26b-5p Microarray 19088304
MIRT560099 hsa-miR-144-3p PAR-CLIP 20371350
MIRT560098 hsa-miR-3688-3p PAR-CLIP 20371350
MIRT560097 hsa-miR-4802-5p PAR-CLIP 20371350
Gene ontology (GO) Gene ontology information of associated ontologies with gene provided by GO database.
GO ID Ontology Definition Evidence Reference
GO:0000012 Process Single strand break repair IDA 29545921
GO:0000109 Component Nucleotide-excision repair complex IBA 21873635
GO:0000109 Component Nucleotide-excision repair complex IDA 12732143
GO:0000209 Process Protein polyubiquitination IBA 21873635
GO:0000209 Process Protein polyubiquitination IDA 12732143
Other IDs Other ids provides unique ids of gene in databases such as OMIM, HGNC, ENSEMBLE.
MIM HGNC e!Ensembl
609412 3439 ENSG00000049167
Protein
UniProt ID Q13216
Protein name DNA excision repair protein ERCC-8 (Cockayne syndrome WD repeat protein CSA)
Protein function Substrate-recognition component of the CSA complex, a DCX (DDB1-CUL4-X-box) E3 ubiquitin-protein ligase complex, involved in transcription-coupled nucleotide excision repair (TC-NER), a process during which RNA polymerase II-blocking lesions are
PDB 4A11 , 6FCV , 7OO3 , 7OOB , 7OOP , 7OPC , 7OPD , 8B3D , 8B3F , 8B3G , 8B3I , 8QH5 , 9BZ0 , 9ER2 , 9FD2
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF00400 WD40 85 128 WD domain, G-beta repeat Repeat
PF00400 WD40 176 215 WD domain, G-beta repeat Repeat
PF00400 WD40 222 273 WD domain, G-beta repeat Repeat
PF00400 WD40 324 362 WD domain, G-beta repeat Repeat
Sequence
MLGFLSARQTGLEDPLRLRRAESTRRVLGLELNKDRDVERIHGGGINTLDIEPVEGRYML
SGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSF
DKTLKVWD
TNTLQTADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSH
ILQGHRQEILAVSWSPRYDYILATASADSRVKLWD
VRRASGCLITLDQHNGKKSQAVESA
NTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWN
SSNGENTLVNYGKVCNNSKKGLKFTVS
CGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQELYSGSRDCNILA
WV
PSLYEPVPDDDETTTKSQLNPAFEDAWSSSDEEG
Sequence length 396
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  KEGG   Reactome
  Nucleotide excision repair
Ubiquitin mediated proteolysis
  Formation of TC-NER Pre-Incision Complex
Transcription-Coupled Nucleotide Excision Repair (TC-NER)
Dual incision in TC-NER
Gap-filling DNA repair synthesis and ligation in TC-NER
Neddylation
Associated diseases Disease information provided by ClinVar, GenCC, and GWAS databases.
Causal
Disease term Disease name dbSNP ID References
Cataract Cataract rs118203965, rs118203966, rs104893685, rs121908938, rs104894175, rs121909048, rs28937573, rs121909049, rs121909050, rs74315488, rs80358200, rs80358203, rs121434643, rs56141211, rs132630322
View all (150 more)
Cerebellar ataxia Progressive cerebellar ataxia rs28936415, rs199476133, rs540331226, rs797046006, rs863224069, rs138358708, rs1057519429, rs750959420, rs1568440440, rs1597846084, rs759460806, rs761486324, rs1240335250, rs1596489887
Cockayne syndrome Cockayne Syndrome, Cockayne Syndrome, Type III, Cockayne Syndrome, Type II, Cockayne Syndrome, Type I, Cockayne syndrome type 2, Cockayne syndrome type 1, Cockayne syndrome type 3 rs121917900, rs121917901, rs121917902, rs387906262, rs2132552521, rs121917903, rs1590474873, rs121917904, rs121434323, rs121434324, rs121434325, rs121434326, rs121913028, rs185142838, rs527236039
View all (69 more)
22466610, 25655951, 22466612, 26204423, 19894250, 27004399, 29057985, 7664335, 25525159, 15744458, 26846091, 16865293, 22829088, 14661080
Cryptorchidism Cryptorchidism rs121912555, rs104894697, rs104894698, rs398122886
Unknown
Disease term Disease name Evidence References Source
Congestive heart failure Congestive heart failure ClinVar
Associations from Text Mining
Disease Name Relationship Type References
Breast Neoplasms Associate 37684436
Cardiomyopathy Dilated Associate 32160415
Cataract Associate 36454558
Cataract Age Related Nuclear Stimulate 39209536
Cerebellar Ataxia Associate 36231052
Chemical and Drug Induced Liver Injury Associate 35248096
Cockayne Syndrome Associate 10739753, 11443545, 12732143, 16246722, 16751180, 17055654, 19329487, 20541997, 22466610, 23623389, 24781187, 24874740, 25463447, 26038566, 28333167
View all (26 more)
Colorectal Neoplasms Associate 33627384
Craniocerebral Trauma Associate 28562347
Drug Hypersensitivity Associate 19329487