Gene Gene information from NCBI Gene database.
Entrez ID 1161
Gene name ERCC excision repair 8, CSA ubiquitin ligase complex subunit
Gene symbol ERCC8
Synonyms (NCBI Gene)
CKN1CSAUVSS2
Chromosome 5
Chromosome location 5q12.1
Summary This gene encodes a WD repeat protein, which interacts with Cockayne syndrome type B (CSB) protein and with p44 protein, a subunit of the RNA polymerase II transcription factor IIH. Mutations in this gene have been identified in patients with hereditary d
SNPs SNP information provided by dbSNP.
30
SNP ID Visualize variation Clinical significance Consequence
rs61754098 G>T Uncertain-significance, likely-benign, conflicting-interpretations-of-pathogenicity Genic downstream transcript variant, coding sequence variant, missense variant
rs121434323 G>C,T Pathogenic Stop gained, coding sequence variant, genic downstream transcript variant
rs121434325 G>A Uncertain-significance, likely-pathogenic Coding sequence variant, intron variant, missense variant
rs148393161 C>T Likely-pathogenic Coding sequence variant, intron variant, missense variant
rs150727525 C>G,T Conflicting-interpretations-of-pathogenicity Coding sequence variant, missense variant, genic downstream transcript variant
miRNA miRNA information provided by mirtarbase database.
146
miRTarBase ID miRNA Experiments Reference
MIRT005022 hsa-miR-521 Western blot 18668526
MIRT029207 hsa-miR-26b-5p Microarray 19088304
MIRT560099 hsa-miR-144-3p PAR-CLIP 20371350
MIRT560098 hsa-miR-3688-3p PAR-CLIP 20371350
MIRT560097 hsa-miR-4802-5p PAR-CLIP 20371350
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
45
GO ID Ontology Definition Evidence Reference
GO:0000012 Process Single strand break repair IDA 29545921
GO:0000109 Component Nucleotide-excision repair complex IBA
GO:0000109 Component Nucleotide-excision repair complex IDA 12732143
GO:0000209 Process Protein polyubiquitination IBA
GO:0000209 Process Protein polyubiquitination IDA 12732143
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
609412 3439 ENSG00000049167
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
Q13216
Protein name DNA excision repair protein ERCC-8 (Cockayne syndrome WD repeat protein CSA)
Protein function Substrate-recognition component of the CSA complex, a DCX (DDB1-CUL4-X-box) E3 ubiquitin-protein ligase complex, involved in transcription-coupled nucleotide excision repair (TC-NER), a process during which RNA polymerase II-blocking lesions are
PDB 4A11 , 6FCV , 7OO3 , 7OOB , 7OOP , 7OPC , 7OPD , 8B3D , 8B3F , 8B3G , 8B3I , 8QH5 , 9BZ0 , 9ER2 , 9FD2
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF00400 WD40 85 128 WD domain, G-beta repeat Repeat
PF00400 WD40 176 215 WD domain, G-beta repeat Repeat
PF00400 WD40 222 273 WD domain, G-beta repeat Repeat
PF00400 WD40 324 362 WD domain, G-beta repeat Repeat
Sequence
MLGFLSARQTGLEDPLRLRRAESTRRVLGLELNKDRDVERIHGGGINTLDIEPVEGRYML
SGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSF
DKTLKVWD
TNTLQTADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSH
ILQGHRQEILAVSWSPRYDYILATASADSRVKLWD
VRRASGCLITLDQHNGKKSQAVESA
NTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWN
SSNGENTLVNYGKVCNNSKKGLKFTVS
CGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQELYSGSRDCNILA
WV
PSLYEPVPDDDETTTKSQLNPAFEDAWSSSDEEG
Sequence length 396
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  KEGG  Reactome
  Nucleotide excision repair
Ubiquitin mediated proteolysis
  Formation of TC-NER Pre-Incision Complex
Transcription-Coupled Nucleotide Excision Repair (TC-NER)
Dual incision in TC-NER
Gap-filling DNA repair synthesis and ligation in TC-NER
Neddylation
Associated diseases Disease associations from ClinVar categorized as Causal (Pathogenic/Likely Pathogenic) or Unknown.
217
Causal Diseases associated with Pathogenic or Likely Pathogenic variants in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession
Cockayne syndrome Likely pathogenic; Pathogenic rs2112491212, rs1211144774, rs121434323, rs121434325, rs2112522829, rs143367518, rs774047625, rs770499406, rs148393161, rs281875222, rs370657735 RCV003492265
RCV005924207
RCV003330380
RCV005406718
RCV003493354
RCV002509376
RCV004800514
RCV001797788
RCV003235400
RCV004525867
RCV003226423
Cockayne syndrome type 1 Likely pathogenic; Pathogenic rs1188760861, rs1290416270, rs756880941, rs530679736, rs2112522943, rs121434323, rs121434325, rs121434326, rs2531795499, rs2531795554, rs2531802244, rs2531839441, rs2531795414, rs786205176, rs2531802402
View all (42 more)
RCV005634131
RCV005038206
RCV005038441
RCV005038394
RCV005032005
RCV000001785
RCV000001787
RCV000001788
RCV002284301
RCV002309610
RCV002309417
RCV002307005
RCV002310570
RCV000170394
RCV003989821
RCV005871188
RCV005036918
RCV005038562
RCV005040578
RCV004566559
RCV000412151
RCV000449643
RCV000667949
RCV000984170
RCV000674649
RCV000674447
RCV000665092
RCV000670140
RCV000666033
RCV000668715
RCV000674994
RCV000664613
RCV000668687
RCV000666637
RCV000674160
RCV000667609
RCV000668671
RCV000669777
RCV000670075
RCV000666696
RCV000674893
RCV000674856
RCV000670506
RCV000758079
RCV000721935
RCV000790399
RCV001809807
RCV001542580
RCV000664947
RCV005042185
RCV000995540
RCV001542579
RCV001250422
RCV001271099
RCV001264150
RCV001264151
RCV001264271
RCV001264272
RCV001264273
RCV001264274
RCV001264275
ERCC8-related disorder Likely pathogenic; Pathogenic rs2112491212, rs530679736 RCV003399385
RCV003394304
Ovarian serous cystadenocarcinoma Likely pathogenic rs551105507 RCV005912614
Unknown Diseases with uncertain, conflicting, or no pathogenic evidence in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession
Abnormality of the nervous system Conflicting classifications of pathogenicity rs2112522829 RCV001814312
Hereditary breast ovarian cancer syndrome Conflicting classifications of pathogenicity rs61754098 RCV001374546
Associations from Text MiningDisease associations identified through Pubtator
Disease Name Relationship Type References
Breast Neoplasms Associate 37684436
Cardiomyopathy Dilated Associate 32160415
Cataract Associate 36454558
Cataract Age Related Nuclear Stimulate 39209536
Cerebellar Ataxia Associate 36231052
Chemical and Drug Induced Liver Injury Associate 35248096
Cockayne Syndrome Associate 10739753, 11443545, 12732143, 16246722, 16751180, 17055654, 19329487, 20541997, 22466610, 23623389, 24781187, 24874740, 25463447, 26038566, 28333167
View all (26 more)
Colorectal Neoplasms Associate 33627384
Craniocerebral Trauma Associate 28562347
Drug Hypersensitivity Associate 19329487