Gene
Entrez ID Entrez Gene ID - the GENE ID in NCBI Gene database.
10499
Gene name Gene Name - the full gene name approved by the HGNC.
Nuclear receptor coactivator 2
Gene symbol Gene Symbol - the official gene symbol approved by the HGNC.
NCOA2
Synonyms (NCBI Gene) Gene synonyms aliases
GRIP1, KAT13C, NCoA-2, SRC2, TIF2, bHLHe75
Chromosome Chromosome number
8
Chromosome location Chromosomal Location - indicates the cytogenetic location of the gene or region on the chromosome.
8q13.3
Summary Summary of gene provided in NCBI Entrez Gene.
The protein encoded by this gene functions as a transcriptional coactivator for nuclear hormone receptors, including steroid, thyroid, retinoid, and vitamin D receptors. The encoded protein acts as an intermediary factor for the ligand-dependent activity
miRNA miRNA information provided by mirtarbase database.
miRTarBase ID miRNA Experiments Reference
MIRT004004 hsa-miR-137 Luciferase reporter assay, qRT-PCR, Western blot 18381414
MIRT041215 hsa-miR-193b-3p CLASH 23622248
MIRT501843 hsa-miR-200c-3p PAR-CLIP 24398324
MIRT501842 hsa-miR-200b-3p PAR-CLIP 24398324
MIRT501841 hsa-miR-429 PAR-CLIP 24398324
Transcription factors
Transcription factor Regulation Reference
CTNNB1 Unknown 16141201
Gene ontology (GO) Gene ontology information of associated ontologies with gene provided by GO database.
GO ID Ontology Definition Evidence Reference
GO:0000122 Process Negative regulation of transcription by RNA polymerase II IEA
GO:0000785 Component Chromatin ISA
GO:0000978 Function RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
GO:0001162 Function RNA polymerase II intronic transcription regulatory region sequence-specific DNA binding IEA
GO:0003682 Function Chromatin binding IEA
Other IDs Other ids provides unique ids of gene in databases such as OMIM, HGNC, ENSEMBLE.
MIM HGNC e!Ensembl
601993 7669 ENSG00000140396
Protein
UniProt ID Q15596
Protein name Nuclear receptor coactivator 2 (NCoA-2) (Class E basic helix-loop-helix protein 75) (bHLHe75) (Transcriptional intermediary factor 2) (hTIF2)
Protein function Transcriptional coactivator for steroid receptors and nuclear receptors (PubMed:23508108, PubMed:8670870, PubMed:9430642, PubMed:22504882, PubMed:26553876). Coactivator of the steroid binding domain (AF-2) but not of the modulating N-terminal do
PDB 1GWQ , 1GWR , 1M2Z , 1MV9 , 1MVC , 1MZN , 1P93 , 1T63 , 1T65 , 1UHL , 1YOK , 1ZDT , 1ZDU , 1ZKY , 2AO6 , 2B1V , 2B1Z , 2B23 , 2FAI , 2G44 , 2G5O , 2LDC , 2P15 , 2P1T , 2P1U , 2P1V , 2Q7J , 2Q7L , 2YJD , 2ZXZ , 2ZY0 , 3A9E , 3CLD , 3DZU , 3DZY , 3E00 , 3E7C , 3E94 , 3ERD , 3FUG , 3GN8 , 3K22 , 3K23 , 3KWY , 3KYT , 3L0E , 3L0J , 3L0L , 3O1D , 3O1E , 3OAP
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF00989 PAS 115 215 PAS fold Domain
PF14598 PAS_11 267 379 Domain
PF16665 NCOA_u2 463 587 Disordered
PF08832 SRC-1 636 709 Steroid receptor coactivator Domain
PF16279 DUF4927 731 816 Domain of unknown function (DUF4927) Family
PF08815 Nuc_rec_co-act 1071 1117 Nuclear receptor coactivator Domain
PF07469 DUF1518 1281 1338 Domain of unknown function (DUF1518) Domain
Sequence
MSGMGENTSDPSRAETRKRKECPDQLGPSPKRNTEKRNREQENKYIEELAELIFANFNDI
DNFNFKPDKCAILKETVKQIRQIKEQEKAAAANIDEVQKSDVSSTGQGVIDKDALGPMML
EALDGFFFVVNLEGNVVFVSENVTQYLRYNQEELMNKSVYSILHVGDHTEFVKNLLPKSI
VNGGSWSGEPPRRNSHTFNCRMLVKPLPDSEEEGH
DNQEAHQKYETMQCFAVSQPKSIKE
EGEDLQSCLICVARRVPMKERPVLPSSESFTTRQDLQGKITSLDTSTMRAAMKPGWEDLV
RRCIQKFHAQHEGESVSYAKRHHHEVLRQGLAFSQIYRFSLSDGTLVAAQTKSKLIRSQT
TNEPQLVISLHMLHREQNV
CVMNPDLTGQTMGKPLNPISSNSPAHQALCSGNPGQDMTLS
SNINFPINGPKEQMGMPMGRFGGSGGMNHVSGMQATTPQGSNYALKMNSPSQSSPGMNPG
QPTSMLSPRHRMSPGVAGSPRIPPSQFSPAGSLHSPVGVCSSTGNSHSYTNSSLNALQAL
SEGHGVSLGSSLASPDLKMGNLQNSPVNMNPPPLSKMGSLDSKDCFG
LYGEPSEGTTGQA
ESSCHPGEQKETNDPNLPPAVSSERADGQSRLHDSKGQTKLLQLLTTKSDQMEPSPLASS
LSDTNKDSTGSLPGSGSTHGTSLKEKHKILHRLLQDSSSPVDLAKLTAE
ATGKDLSQESS
STAPGSEVTIKQEPVSPKKKENALLRYLLDKDDTKDIGLPEITPKLERLDSKTDPASNTK
LIAMKTEKEEMSFEPGDQPGSELDNLEEILDDLQNS
QLPQLFPDTRPGAPAGSVDKQAII
NDLMQLTAENSPVTPVGAQKTALRISQSTFNNPRPGQLGRLLPNQNLPLDITLQSPTGAG
PFPPIRNSSPYSVIPQPGMMGNQGMIGNQGNLGNSSTGMIGNSASRPTMPSGEWAPQSSA
VRVTCAATTSAMNRPVQGGMIRNPAASIPMRPSSQPGQRQTLQSQVMNIGPSELEMNMGG
PQYSQQQAPPNQTAPWPESILPIDQASFASQNRQPFGSSPDDLLCPHPAAESPSDEGALL
DQLYLALRNFDGLEEIDRALGIPELVSQSQAVDPEQF
SSQDSNIMLEQKAPVFPQQYASQ
AQMAQGSYSPMQDPNFHTMGQRPSYATLRMQPRPGLRPTGLVQNQPNQLRLQLQHRLQAQ
QNRQPLMNQISNVSNVNLTLRPGVPTQAPINAQMLAQRQREILNQHLRQRQMHQQQQVQQ
RTLMMRGQGLNMTPSMVAPSGMPATMSNPRIPQANAQQFPFPPNYGISQQPDPGFTGATT
PQSPLMSPRMAHTQSPMM
QQSQANPAYQAPSDINGWAQGNMGGNSMFSQQSPPHFGQQAN
TSMYSNNMNINVSMATNTGGMSSMNQMTGQISMTSVTSVPTSGLSSMGPEQVNDPALRGG
NLFPNQLPGMDMIKQEGDTTRKYC
Sequence length 1464
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  KEGG   Reactome
  Estrogen signaling pathway
Thyroid hormone signaling pathway
  RORA activates gene expression
Recycling of bile acids and salts
Synthesis of bile acids and bile salts
Synthesis of bile acids and bile salts via 7alpha-hydroxycholesterol
Synthesis of bile acids and bile salts via 27-hydroxycholesterol
PPARA activates gene expression
Endogenous sterols
Transcriptional activation of mitochondrial biogenesis
Activation of gene expression by SREBF (SREBP)
HATs acetylate histones
Transcriptional regulation of white adipocyte differentiation
Regulation of lipid metabolism by PPARalpha
Circadian Clock
Activated PKN1 stimulates transcription of AR (androgen receptor) regulated genes KLK2 and KLK3
Estrogen-dependent gene expression
Associated diseases Disease information provided by ClinVar, GenCC, and GWAS databases.
Causal
Disease term Disease name dbSNP ID References
Breast cancer Malignant neoplasm of breast rs587776547, rs1137887, rs137853007, rs587776650, rs80359351, rs80359714, rs121917783, rs104886456, rs121964878, rs80359874, rs80357868, rs80357508, rs387906843, rs80357569, rs80358158
View all (309 more)
20332317
Breast carcinoma Breast Carcinoma rs80359671, rs11540652, rs28934575, rs28897672, rs137886232, rs193922376, rs80357783, rs80359306, rs80359405, rs80359507, rs80359598, rs80358429, rs397507683, rs397515636, rs80359451
View all (71 more)
20332317
Marfan syndrome Mammary Carcinoma, Human rs137854456, rs137854457, rs267606796, rs137854458, rs137854459, rs137854460, rs137854470, rs137854471, rs267606797, rs137854461, rs137854462, rs137854463, rs869025419, rs137854464, rs137854465
View all (942 more)
20332317
Multiple sclerosis Multiple Sclerosis rs104895219, rs483353022, rs483353023, rs483353028, rs483353029, rs483353024, rs483353030, rs3207617, rs483353031, rs483353032, rs483353033, rs483353034, rs483353035, rs483353036, rs483353039
View all (4 more)
24076602
Unknown
Disease term Disease name Evidence References Source
Multiple Sclerosis Multiple Sclerosis GWAS
Systemic lupus erythematosus Systemic lupus erythematosus GWAS
Uterine Fibroids Uterine Fibroids GWAS
Atrial Fibrillation Atrial Fibrillation GWAS
Associations from Text Mining
Disease Name Relationship Type References
Adenocarcinoma of Lung Associate 33593309
Angiofibroma Associate 22337624, 27633981, 30179902, 37680034
Breast Neoplasms Associate 19095746, 20920219, 21059860, 23936147, 24282087, 24304549, 27107013
Cap Myopathy Associate 27606620
Carcinogenesis Associate 34837064
Carcinoma Associate 23463663, 26501226, 29218853, 30179902, 34067464, 35452896, 38607246
Carcinoma Pancreatic Ductal Associate 36302831
Carcinoma Squamous Cell Associate 34398873
Chondrosarcoma Mesenchymal Associate 22034177, 23185413, 24839999, 30819134, 34837064, 35342947, 35672279, 37225644, 40301759
Colorectal Neoplasms Inhibit 18360708