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Gene Gene information from NCBI Gene database.
Entrez ID 6908
Gene name TATA-box binding protein
Gene symbol TBP
Synonyms (NCBI Gene)
GTF2DGTF2D1HDL4SCA17TBP1TFIID
Chromosome 6
Chromosome location 6q27
Summary Initiation of transcription by RNA polymerase II requires the activities of more than 70 polypeptides. The protein that coordinates these activities is transcription factor IID (TFIID), which binds to the core promoter to position the polymerase properly,
miRNA miRNA information provided by mirtarbase database.
191 Show/Hide all (191)
miRTarBase ID miRNA Experiments Reference
MIRT051286 hsa-miR-16-5p CLASH 23622248
MIRT040014 hsa-miR-615-3p CLASH 23622248
MIRT734136 hsa-miR-613 Western blottingImmunofluorescenceqRT-PCR 32943930
MIRT1414826 hsa-miR-1206 CLIP-seq
MIRT1414827 hsa-miR-1273g CLIP-seq
Transcription factors Transcription factors information provided by TRRUST V2 database.
14 Show/Hide all (14)
Transcription factor Regulation Reference
AR Unknown 9238003
BTAF1 Repression 20627952
BTAF1 Unknown 14988402;15509807;16858867
CDX1 Unknown 17158164
CREM Unknown 10409662
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
61 Show/Hide all (61)
GO ID Ontology Definition Evidence Reference
GO:0000785 Component Chromatin IDA 24289924
GO:0000791 Component Euchromatin IDA 19861239
GO:0000976 Function Transcription cis-regulatory region binding IDA 7933101, 9027316, 16540471
GO:0000978 Function RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
GO:0000979 Function RNA polymerase II core promoter sequence-specific DNA binding IDA 29111974
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
600075 11588 ENSG00000112592
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
P20226
Protein name TATA-box-binding protein (TATA sequence-binding protein) (TATA-binding factor) (TATA-box factor) (Transcription initiation factor TFIID TBP subunit)
Protein function The TFIID basal transcription factor complex plays a major role in the initiation of RNA polymerase II (Pol II)-dependent transcription (PubMed:33795473). TFIID recognizes and binds promoters with or without a TATA box via its subunit TBP, a TAT
PDB 1C9B , 1CDW , 1JFI , 1NVP , 1TGH , 4ROC , 4ROD , 4ROE , 5FUR , 5IY6 , 5IY7 , 5IY8 , 5IY9 , 5IYA , 5IYB , 5IYC , 5IYD , 5N9G , 6MZD , 6MZL , 6MZM , 6O9L , 7EDX , 7EG7 , 7EG8 , 7EG9 , 7EGA , 7EGB , 7EGC , 7EGD , 7EGE , 7EGF , 7EGI , 7EGJ , 7ENA , 7ENC , 7LBM , 7NVR , 7NVS , 7NVT , 7NVU , 7NVY , 7NVZ , 7NW0 , 7ZWC , 7ZWD , 7ZX7 , 7ZX8 , 7ZXE , 8BVW , 8BYQ
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF00352 TBP 162 → 244 Transcription factor TFIID (or TATA-binding protein, TBP) Domain
PF00352 TBP 252 → 335 Transcription factor TFIID (or TATA-binding protein, TBP) Domain
Tissue specificity TISSUE SPECIFICITY: Widely expressed, with levels highest in the testis and ovary. {ECO:0000269|PubMed:17570761}.
Sequence
MDQNNSLPPYAQGLASPQGAMTPGIPIFSPMMPYGTGLTPQPIQNTNSLSILEEQQRQQQ
QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQAVAAAAVQQSTSQQATQGTSGQAPQ
LFHSQTLTTAPLPGTTPLYPSPMTPMTPITPATPASESSGIVPQLQNIVSTVNLGCKLDL
KTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKSEEQSRLAARKYARV
VQKL
GFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQFSSYEPELFPGLIYRMIKPRI
VLLIFVSGKVVLTGAKVRAEIYEAFENIYPILKGF
RKTT
Sequence length 339
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
KEGG Pathway Reactome Pathway
Basal transcription factors B-WICH complex positively regulates rRNA expression
Huntington disease RNA Polymerase II Pre-transcription Events
Spinocerebellar ataxia Regulation of TP53 Activity through Phosphorylation
Human papillomavirus infection RNA polymerase II transcribes snRNA genes
Human T-cell leukemia virus 1 infection RNA Polymerase I Transcription Initiation
Viral carcinogenesis RNA Polymerase I Promoter Escape
  RNA Polymerase II Promoter Escape
  RNA Polymerase II Transcription Pre-Initiation And Promoter Opening
  RNA Polymerase I Transcription Termination
  RNA Polymerase II Transcription Initiation
  RNA Polymerase II Transcription Initiation And Promoter Clearance
  RNA Polymerase III Transcription Initiation From Type 1 Promoter
  RNA Polymerase III Transcription Initiation From Type 2 Promoter
  RNA Polymerase III Transcription Initiation From Type 3 Promoter
  Estrogen-dependent gene expression
Associated diseases Disease associations from ClinVar (causal & non-causal) and other databases (OMIM, Orphanet, GWAS, etc.).
7
Evidence Score: ★☆☆☆☆  Gene-disease association found in Text Mining only ★★☆☆☆  Found in Text Mining and Unknown/Other Associations ★★★☆☆  Reported in Unknown/Other Associations across ≥2 Sources ★★★★☆  ClinVar: Pathogenic/Likely Pathogenic (<5 Variants) ★★★★★  ClinVar: Pathogenic/Likely Pathogenic (≥5 Variants)
Causal Diseases associated with Pathogenic or Likely Pathogenic variants in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession Evidence Score
Spinocerebellar ataxia type 17 Pathogenic rs752404282 RCV003322712
★★★★★
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Unknown / Other Associations ClinVar entries with uncertain/conflicting evidence, and associations from other databases (OMIM, Orphanet, GWAS, etc.) where the gene is not established as causal.
Show/Hide Unknown Diseases (6)
Phenotype Name Clinical Significance Source Reference Evidence Score
AUTOSOMAL DOMINANT LATE ONSET PARKINSON DISEASE — Disgenet —
★★★★★
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
DIABETES MELLITUS, INSULIN-DEPENDENT — Disgenet —
★★★★★
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Parkinson disease, late-onset Uncertain significance; Benign; Likely benign ClinVar
CTD, ClinVar, Disgenet
CTD, ClinVar, Disgenet
—
★★★★★
★★★☆☆
Reported in Unknown/Other Associations (≥2 sources)
SCHIZOPHRENIA — Disgenet —
★★★★★
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
SPINOCEREBELLAR ATAXIA 17 — CTD, Disgenet, HPO
CTD, Disgenet, HPO
CTD, Disgenet, HPO
—
★★★★★
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Associations from Text Mining Disease associations identified through text mining
Show/Hide Text Mining Associations (154)
Disease Name Disease (Merged) Source PMID Relationship Type Evidence Score
Adenocarcinoma Adenocarcinoma BEFREE 20353996
★★★★★
★☆☆☆☆
Found in Text Mining only
Adenoma Adenoma BEFREE 24135907
★★★★★
★☆☆☆☆
Found in Text Mining only
Amyotrophic Lateral Sclerosis Amyotrophic lateral sclerosis Pubtator 23424617 Associate
★★★★★
★☆☆☆☆
Found in Text Mining only
Anodontia Anodontia Pubtator 37894839 Associate
★★★★★
★☆☆☆☆
Found in Text Mining only
Apraxias Apraxia HPO_DG
★★★★★
★☆☆☆☆
Found in Text Mining only
Arthritis Arthritis BEFREE 30617627
★★★★★
★☆☆☆☆
Found in Text Mining only
Arthritis Rheumatoid Rheumatoid arthritis Pubtator 37894839 Associate
★★★★★
★☆☆☆☆
Found in Text Mining only
Astrocytoma Astrocytoma Pubtator 20511187 Associate
★★★★★
★☆☆☆☆
Found in Text Mining only
Ataxia Ataxia Pubtator 15989694 Associate
★★★★★
★☆☆☆☆
Found in Text Mining only
Ataxia, Spinocerebellar Spinocerebellar Ataxia BEFREE 11448935, 11563629, 12758065, 14756671, 19581089, 19659750, 21108634, 22297462, 22971727, 26077168, 29427105, 30760647, 30933216, 31669734
★★★★★
★☆☆☆☆
Found in Text Mining only