CDY1 (chromodomain Y-linked 1)

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Gene Gene information from NCBI Gene database.
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Entrez ID 9085
Gene name Chromodomain Y-linked 1
Gene symbol CDY1
Synonyms (NCBI Gene)
CDYCDY1A
Chromosome Y
Chromosome location Yq11.23
Summary This gene encodes a protein containing a chromodomain and a histone acetyltransferase catalytic domain. Chromodomain proteins are components of heterochromatin-like complexes and can act as gene repressors. This protein is localized to the nucleus of late
miRNA miRNA information provided by mirtarbase database.
3
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miRTarBase ID miRNA Experiments Reference
MIRT882842 hsa-miR-1303 CLIP-seq
MIRT882843 hsa-miR-142-5p CLIP-seq
MIRT882844 hsa-miR-561 CLIP-seq
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
15 Show/Hide all (15)
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GO ID Ontology Definition Evidence Reference
GO:0003714 Function Transcription corepressor activity IBA
GO:0004402 Function Histone acetyltransferase activity IEA
GO:0005634 Component Nucleus IBA
GO:0005634 Component Nucleus IDA 18450745
GO:0005634 Component Nucleus IEA
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
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MIM HGNC e!Ensembl
400016 1809 ENSG00000172288
Interactions View interactions
Associated diseases Disease associations from ClinVar (causal & non-causal) and other databases (OMIM, Orphanet, GWAS, etc.).
2
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Evidence Score: ★☆☆☆☆  Gene-disease association found in Text Mining only ★★☆☆☆  Found in Text Mining and Unknown/Other Associations ★★★☆☆  Reported in Unknown/Other Associations across ≥2 Sources ★★★★☆  ClinVar: Pathogenic/Likely Pathogenic (<5 Variants) ★★★★★  ClinVar: Pathogenic/Likely Pathogenic (≥5 Variants)
Unknown / Other Associations ClinVar entries with uncertain/conflicting evidence, and associations from other databases (OMIM, Orphanet, GWAS, etc.) where the gene is not established as causal.
Phenotype Name Clinical Significance Source Reference Evidence Score
SPERMATOGENIC FAILURE, NONOBSTRUCTIVE, Y-LINKED — CTD —
★★★★★
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
SPERMATOGENIC FAILURE, Y-LINKED, 2 — ClinVar, HPO
ClinVar, HPO 		—
★★★★★
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Associations from Text Mining Disease associations identified through text mining
Show/Hide Text Mining Associations (11)
Disease Name Disease (Merged) Source PMID Relationship Type Evidence Score
Azoospermia Azoospermia BEFREE 11163833, 18326516, 26149076
★★★★★
★☆☆☆☆
Found in Text Mining only
Azoospermia Azoospermia Pubtator 11163833, 16491273, 26149076 Associate
★★★★★
★☆☆☆☆
Found in Text Mining only
Azoospermia Azoospermia HPO_DG
★★★★★
★☆☆☆☆
Found in Text Mining only
Infertility Infertility Pubtator 15520406 Associate
★★★★★
★☆☆☆☆
Found in Text Mining only
Infertility Male Male infertility Pubtator 15520406, 26149076 Associate
★★★★★
★☆☆☆☆
Found in Text Mining only
Malignant neoplasm of prostate Prostate cancer BEFREE 11743352
★★★★★
★☆☆☆☆
Found in Text Mining only
Multiple Myeloma Multiple myeloma Pubtator 23475625 Associate
★★★★★
★☆☆☆☆
Found in Text Mining only
Multiple Myeloma Multiple myeloma BEFREE 23475625
★★★★★
★☆☆☆☆
Found in Text Mining only
Oligospermia Oligospermia BEFREE 11263480, 18326516, 26149076
★★★★★
★☆☆☆☆
Found in Text Mining only
Prostate carcinoma Prostate cancer BEFREE 11743352
★★★★★
★☆☆☆☆
Found in Text Mining only
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BPY2 1 shared diseaseSpermatogenic failure, y-linked 3 shared evidence sourcesCTD (Spermatogenic failure, y-linked), ClinVar (Spermatogenic failure, y-linked), HPO (Spermatogenic failure, y-linked) Related via 1 shared disease including Spermatogenic failure, y-linked — evidence mostly CTD. CDY2A 1 shared diseaseSpermatogenic failure, y-linked 3 shared evidence sourcesCTD (Spermatogenic failure, y-linked), ClinVar (Spermatogenic failure, y-linked), HPO (Spermatogenic failure, y-linked) Related via 1 shared disease including Spermatogenic failure, y-linked — evidence mostly CTD. HSFY1 1 shared diseaseSpermatogenic failure, y-linked 3 shared evidence sourcesCTD (Spermatogenic failure, y-linked), ClinVar (Spermatogenic failure, y-linked), HPO (Spermatogenic failure, y-linked) Related via 1 shared disease including Spermatogenic failure, y-linked — evidence mostly CTD. VCY 1 shared diseaseSpermatogenic failure, y-linked 3 shared evidence sourcesCTD (Spermatogenic failure, y-linked), ClinVar (Spermatogenic failure, y-linked), HPO (Spermatogenic failure, y-linked) Related via 1 shared disease including Spermatogenic failure, y-linked — evidence mostly CTD. DAZ1 1 shared diseaseSpermatogenic failure, y-linked 3 shared evidence sourcesCTD (Spermatogenic failure, y-linked), ClinVar (Spermatogenic failure, y-linked), HPO (Spermatogenic failure, y-linked) Related via 1 shared disease including Spermatogenic failure, y-linked — evidence mostly CTD.
Chromosome y microdeletion syndrome Linked via 1 of 5 related genesDAZ1