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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
De barsy syndrome Developmental disorder-joint hypermobility-skin laxity with or without metabolic abnormalities
1 gene
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1 of 1 corroborated by 2+ sources
0.500 1.000 6.46e-5 1.98e-4 ✓ sig. Cluster 187 →
Developmental disorder-joint hypermobility-skin laxity with or without metabolic abnormalities Spastic paraplegia 9b, autosomal recessive
1 gene
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0.500 1.000 6.46e-5 1.98e-4 ✓ sig. Cluster 187 →
Developmental disorder-joint hypermobility-skin laxity with or without metabolic abnormalities Spastic paraplegia 9
1 gene
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0.500 1.000 6.46e-5 1.98e-4 ✓ sig. Cluster 187 →
Increased susceptibility to fractures Joint hypermobility
1 gene
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KDELR2(1)
0.500 1.000 6.46e-5 1.98e-4 ✓ sig. —
Developmental disorder-joint hypermobility-skin laxity with or without metabolic abnormalities P5CS deficiency
1 gene
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1 of 1 corroborated by 2+ sources
0.500 1.000 6.46e-5 1.98e-4 ✓ sig. Cluster 187 →
Cardiac anomalies-short stature-joint hypermobility-facial dysmorphism syndrome Chromosome 6q24-q25 deletion syndrome
1 gene
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1 of 1 corroborated by 2+ sources
TAB2(2)
0.500 1.000 6.46e-5 1.98e-4 ✓ sig. —
Cutis laxa, corneal clouding, and mental retardation Developmental disorder-joint hypermobility-skin laxity with or without metabolic abnormalities
1 gene
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0.500 1.000 6.46e-5 1.98e-4 ✓ sig. Cluster 187 →
Cutis laxa, autosomal recessive, 3a Developmental disorder-joint hypermobility-skin laxity with or without metabolic abnormalities
1 gene
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0.500 1.000 6.46e-5 1.98e-4 ✓ sig. Cluster 187 →
Cutis laxa, autosomal dominant 3 Developmental disorder-joint hypermobility-skin laxity with or without metabolic abnormalities
1 gene
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0.500 1.000 6.46e-5 1.98e-4 ✓ sig. Cluster 187 →
Cardiac anomalies-short stature-joint hypermobility-facial dysmorphism syndrome Congenital heart defects, multiple types, 2
1 gene
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1 of 1 corroborated by 2+ sources
TAB2(4)
0.500 1.000 6.46e-5 1.98e-4 ✓ sig. —
Complex spastic paraplegia Developmental disorder-joint hypermobility-skin laxity with or without metabolic abnormalities
1 gene
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1 of 1 corroborated by 2+ sources
0.333 1.000 1.29e-4 3.27e-4 ✓ sig. Cluster 187 →
Cardiac anomalies-short stature-joint hypermobility-facial dysmorphism syndrome Stress urinary incontinence
1 gene
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1 of 1 corroborated by 2+ sources
TAB2(2)
0.333 1.000 1.29e-4 3.27e-4 ✓ sig. —
Bicuspid aortic valve Cardiac anomalies-short stature-joint hypermobility-facial dysmorphism syndrome
1 gene
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1 of 1 corroborated by 2+ sources
TAB2(2)
0.067 1.000 9.04e-4 1.41e-3 ✓ sig. —
Cardiac anomalies-short stature-joint hypermobility-facial dysmorphism syndrome Diverticulitis
1 gene
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1 of 1 corroborated by 2+ sources
TAB2(3)
0.034 1.000 1.81e-3 2.49e-3 ✓ sig. —
Joint hypermobility Osteogenesis imperfecta
1 gene
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1 of 1 corroborated by 2+ sources
KDELR2(5)
0.024 1.000 2.65e-3 3.41e-3 ✓ sig. —
Bone fragility with contractures, arterial rupture, and deafness Joint hypermobility
1 gene
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1 of 1 corroborated by 2+ sources
KDELR2(2)
0.020 1.000 3.16e-3 4.00e-3 ✓ sig. —
Joint hypermobility Osteoporosis-pseudoglioma syndrome
1 gene
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1 of 1 corroborated by 2+ sources
KDELR2(2)
0.020 1.000 3.16e-3 4.00e-3 ✓ sig. —
Gallstones Joint hypermobility
1 gene
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1 of 1 corroborated by 2+ sources
KDELR2(2)
0.008 1.000 8.01e-3 9.13e-3 ✓ sig. —

Showing 18 of 18 matching pairs, sorted by significance (ascending). Click a column header to sort.