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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Focal epilepsy Partial epilepsy
4 genes
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4 of 4 corroborated by 2+ sources
DEPDC5(2), CLASP1(2), NPRL2(3), NPRL3(3)
0.089 1.000 5.80e-11 5.90e-10 ✓ sig. —
Familial focal epilepsy with variable foci Focal epilepsy
3 genes
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3 of 3 corroborated by 2+ sources
DEPDC5(5), NPRL2(6), NPRL3(5)
0.300 0.750 3.68e-10 3.48e-9 ✓ sig. —
Focal epilepsy Progressive myoclonic epilepsy
3 genes
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3 of 3 corroborated by 2+ sources
DEPDC5(3), NPRL2(4), NPRL3(4)
0.115 0.750 1.33e-8 1.06e-7 ✓ sig. —
Familial focal epilepsy with variable foci Progressive myoclonic epilepsy
3 genes
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3 of 3 corroborated by 2+ sources
DEPDC5(5), NPRL2(5), NPRL3(5)
0.100 0.375 1.85e-7 1.23e-6 ✓ sig. —
Continuous spike and wave during sleep syndrome Focal epilepsy with speech disorder and impaired intellectual development
1 gene
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1 of 1 corroborated by 2+ sources
GRIN2A(3)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. Cluster 365 →
Deafness, onychodystrophy, osteodystrophy, impaired intellectual development, and seizures syndrome Focal epilepsy-intellectual disability-cerebro-cerebellar malformation
1 gene
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1 of 1 corroborated by 2+ sources
TBC1D24(3)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. Cluster 90 →
Deafness with congenital onychodystrophy Focal epilepsy-intellectual disability-cerebro-cerebellar malformation
1 gene
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1 of 1 corroborated by 2+ sources
TBC1D24(2)
0.333 1.000 1.30e-4 3.93e-4 ✓ sig. Cluster 90 →
Focal epilepsy-intellectual disability-cerebro-cerebellar malformation Periodic paralysis
1 gene
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1 of 1 corroborated by 2+ sources
TBC1D24(2)
0.333 1.000 1.30e-4 3.93e-4 ✓ sig. Cluster 90 →
Doors syndrome Focal epilepsy-intellectual disability-cerebro-cerebellar malformation
1 gene
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1 of 1 corroborated by 2+ sources
TBC1D24(4)
0.333 1.000 1.30e-4 3.93e-4 ✓ sig. Cluster 90 →
Focal epilepsy-intellectual disability-cerebro-cerebellar malformation Infantile myoclonic epilepsy
1 gene
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1 of 1 corroborated by 2+ sources
TBC1D24(2)
0.333 1.000 1.30e-4 3.93e-4 ✓ sig. Cluster 90 →
Continuous spike and wave during slow wave sleep syndrome Focal epilepsy with speech disorder and impaired intellectual development
1 gene
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1 of 1 corroborated by 2+ sources
GRIN2A(3)
0.333 1.000 1.30e-4 3.93e-4 ✓ sig. Cluster 365 →
Digitrenocerebral syndrome Focal epilepsy-intellectual disability-cerebro-cerebellar malformation
1 gene
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1 of 1 corroborated by 2+ sources
TBC1D24(2)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. Cluster 90 →
Familial temporal lobe epilepsy Focal epilepsy with speech disorder and impaired intellectual development
1 gene
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1 of 1 corroborated by 2+ sources
GRIN2A(3)
0.125 1.000 4.55e-4 9.73e-4 ✓ sig. —
Complex partial epilepsy Familial focal epilepsy with variable foci
1 gene
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1 of 1 corroborated by 2+ sources
SCN3A(4)
0.111 1.000 5.20e-4 1.06e-3 ✓ sig. —
Familial focal epilepsy with variable foci Trident hand
1 gene
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NPR2(1)
0.111 1.000 5.20e-4 1.06e-3 ✓ sig. —
Focal epilepsy with speech disorder and impaired intellectual development Pyridoxine dependent epilepsy
1 gene
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1 of 1 corroborated by 2+ sources
GRIN2A(3)
0.111 1.000 5.20e-4 1.06e-3 ✓ sig. Cluster 365 →
Focal epilepsy Roifman syndrome
1 gene
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1 of 1 corroborated by 2+ sources
CLASP1(2)
0.143 0.333 7.79e-4 1.41e-3 ✓ sig. —
Epilepsy with auditory features Focal epilepsy
1 gene
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1 of 1 corroborated by 2+ sources
DEPDC5(3)
0.125 0.250 1.04e-3 1.74e-3 ✓ sig. —
Focal epilepsy Lateral temporal lobe epilepsy
1 gene
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1 of 1 corroborated by 2+ sources
DEPDC5(2)
0.125 0.250 1.04e-3 1.74e-3 ✓ sig. —
Cortical dysplasia-focal epilepsy syndrome Specific language disorder
1 gene
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1 of 1 corroborated by 2+ sources
CNTNAP2(4)
0.050 1.000 1.23e-3 1.99e-3 ✓ sig. Cluster 179 →
Focal epilepsy with speech disorder and impaired intellectual development Language development disorders
1 gene
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1 of 1 corroborated by 2+ sources
GRIN2A(3)
0.037 1.000 1.69e-3 2.53e-3 ✓ sig. —
Cortical dysplasia-focal epilepsy syndrome Language development disorders
1 gene
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1 of 1 corroborated by 2+ sources
CNTNAP2(4)
0.037 1.000 1.69e-3 2.53e-3 ✓ sig. Cluster 179 →
Epilepsy with auditory features Familial focal epilepsy with variable foci
1 gene
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1 of 1 corroborated by 2+ sources
DEPDC5(4)
0.083 0.250 2.08e-3 2.97e-3 ✓ sig. —
Cortical dysplasia-focal epilepsy syndrome Hyperkinesia
1 gene
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1 of 1 corroborated by 2+ sources
CNTNAP2(4)
0.029 1.000 2.14e-3 3.04e-3 ✓ sig. —
Cortical dysplasia-focal epilepsy syndrome Rolandic epilepsy
1 gene
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1 of 1 corroborated by 2+ sources
CNTNAP2(4)
0.021 1.000 3.05e-3 4.03e-3 ✓ sig. —

Showing 25 of 26 matching pairs, sorted by significance (ascending). Click a column header to sort.