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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
0 selected Clear
Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
Dent disease Thyroid disease
1 gene
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1 of 1 corroborated by 2+ sources
INPP5B(2)
0.018 0.333 1.03e-2 1.16e-2 ✓ sig. —
Griscelli syndrome Peripheral nervous system disease
1 gene
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1 of 1 corroborated by 2+ sources
MYO5A(7)
0.018 0.333 1.03e-2 1.16e-2 ✓ sig. —
Appendiceal disorder Central nervous system cancer
2 genes
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FFAR2(1), KRTDAP(1)
0.003 0.500 1.03e-2 1.16e-2 ✓ sig. —
2-methylbutyryl-coa dehydrogenase deficiency Periodontitis
1 gene
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1 of 1 corroborated by 2+ sources
ACADSB(5)
0.006 1.000 1.03e-2 1.16e-2 ✓ sig. —
Papillon-lefevre syndrome Periodontitis
1 gene
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1 of 1 corroborated by 2+ sources
CTSC(7)
0.006 1.000 1.03e-2 1.16e-2 ✓ sig. —
Periodontitis platelet-type bleeding disorder 15
1 gene
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1 of 1 corroborated by 2+ sources
ACTN1(2)
0.006 1.000 1.03e-2 1.16e-2 ✓ sig. —
Periodontitis pycnodysostosis
1 gene
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1 of 1 corroborated by 2+ sources
CTSK(2)
0.006 1.000 1.03e-2 1.16e-2 ✓ sig. —
Periodontitis Shukla-vernon syndrome
1 gene
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1 of 1 corroborated by 2+ sources
BCORL1(5)
0.006 1.000 1.03e-2 1.16e-2 ✓ sig. —
hypokalemic alkalosis, familial, with specific renal tubulopathy Periodontitis
1 gene
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1 of 1 corroborated by 2+ sources
KCNJ16(2)
0.006 1.000 1.03e-2 1.16e-2 ✓ sig. —
hypomyelinating leukodystrophy 5 Periodontitis
1 gene
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1 of 1 corroborated by 2+ sources
HYCC1(2)
0.006 1.000 1.03e-2 1.16e-2 ✓ sig. —
intellectual developmental disorder, autosomal dominant 65 Periodontitis
1 gene
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1 of 1 corroborated by 2+ sources
KDM4B(2)
0.006 1.000 1.03e-2 1.16e-2 ✓ sig. —
Catel-manzke syndrome Hyperopia
1 gene
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1 of 1 corroborated by 2+ sources
KYNU(2)
0.012 0.500 1.02e-2 1.16e-2 ✓ sig. Cluster 386 →
Hyperopia Trichotillomania
1 gene
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1 of 1 corroborated by 2+ sources
SLITRK1(5)
0.012 0.500 1.02e-2 1.16e-2 ✓ sig. Cluster 386 →
Auditory neuropathy with optic atrophy Hyperopia
1 gene
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1 of 1 corroborated by 2+ sources
GRIN2C(2)
0.012 0.500 1.02e-2 1.16e-2 ✓ sig. —
Liver disease polycystic liver disease 1
1 gene
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1 of 1 corroborated by 2+ sources
PRKCSH(2)
0.006 1.000 1.02e-2 1.15e-2 ✓ sig. —
Abetalipoproteinemia Liver disease
1 gene
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1 of 1 corroborated by 2+ sources
MTTP(2)
0.006 1.000 1.02e-2 1.15e-2 ✓ sig. —
Congenital alpha-fetoprotein deficiency Liver disease
1 gene
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1 of 1 corroborated by 2+ sources
AFP(3)
0.006 1.000 1.02e-2 1.15e-2 ✓ sig. —
Esophageal cancer thrombotic disease
1 gene
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1 of 1 corroborated by 2+ sources
MAST2(2)
0.006 1.000 1.02e-2 1.15e-2 ✓ sig. Cluster 67 →
Liver disease tooth agenesis, selective, 9
1 gene
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1 of 1 corroborated by 2+ sources
GREM2(2)
0.006 1.000 1.02e-2 1.15e-2 ✓ sig. —
Esophageal cancer Vici syndrome
1 gene
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1 of 1 corroborated by 2+ sources
EPG5(5)
0.006 1.000 1.02e-2 1.15e-2 ✓ sig. —
Hereditary coproporphyria Liver disease
1 gene
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1 of 1 corroborated by 2+ sources
CPOX(5)
0.006 1.000 1.02e-2 1.15e-2 ✓ sig. —
hereditary spastic paraplegia 62 Liver disease
1 gene
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1 of 1 corroborated by 2+ sources
ERLIN1(2)
0.006 1.000 1.02e-2 1.15e-2 ✓ sig. —
Esophageal cancer friedreich ataxia
1 gene
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1 of 1 corroborated by 2+ sources
FXN(2)
0.006 1.000 1.02e-2 1.15e-2 ✓ sig. Cluster 67 →
Esophageal cancer glycosylphosphatidylinositol biosynthesis defect 21
1 gene
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1 of 1 corroborated by 2+ sources
PIGU(2)
0.006 1.000 1.02e-2 1.15e-2 ✓ sig. —
Liver disease severe combined immunodeficiency due to LAT deficiency
1 gene
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1 of 1 corroborated by 2+ sources
LAT(3)
0.006 1.000 1.02e-2 1.15e-2 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.