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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
0 selected Clear
Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
Huntington disease Salt-sensitive hypertension
1 gene
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1 of 1 corroborated by 2+ sources
ADD1(2)
0.016 0.333 1.18e-2 1.33e-2 ✓ sig. —
Intestinal vascular insufficiency Small cell lung carcinoma
1 gene
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NEDD9(1)
0.011 0.500 1.18e-2 1.32e-2 ✓ sig. —
joubert syndrome 21 Optic atrophy
1 gene
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1 of 1 corroborated by 2+ sources
CSPP1(2)
0.005 1.000 1.18e-2 1.32e-2 ✓ sig. —
LCA5-related retinopathy Optic atrophy
1 gene
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1 of 1 corroborated by 2+ sources
LCA5(2)
0.005 1.000 1.18e-2 1.32e-2 ✓ sig. —
leber-like hereditary optic neuropathy, autosomal recessive 1 Optic atrophy
1 gene
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1 of 1 corroborated by 2+ sources
DNAJC30(2)
0.005 1.000 1.18e-2 1.32e-2 ✓ sig. —
Optic atrophy retinitis pigmentosa 65
1 gene
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1 of 1 corroborated by 2+ sources
CDHR1(2)
0.005 1.000 1.18e-2 1.32e-2 ✓ sig. Cluster 7 →
Optic atrophy retinitis pigmentosa 86
1 gene
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1 of 1 corroborated by 2+ sources
0.005 1.000 1.18e-2 1.32e-2 ✓ sig. Cluster 7 →
Optic atrophy retinitis pigmentosa 9
1 gene
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1 of 1 corroborated by 2+ sources
RP9(2)
0.005 1.000 1.18e-2 1.32e-2 ✓ sig. Cluster 7 →
Optic atrophy Retinitis pigmentosa and erythrocytic microcytosis
1 gene
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1 of 1 corroborated by 2+ sources
TRNT1(5)
0.005 1.000 1.18e-2 1.32e-2 ✓ sig. —
Optic atrophy Sideroblastic anemia with b-cell immunodeficiency
1 gene
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1 of 1 corroborated by 2+ sources
TRNT1(5)
0.005 1.000 1.18e-2 1.32e-2 ✓ sig. —
microcephaly and chorioretinopathy 1 Optic atrophy
1 gene
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1 of 1 corroborated by 2+ sources
TUBGCP6(2)
0.005 1.000 1.18e-2 1.32e-2 ✓ sig. —
Bosch-boonstra-schaaf optic atrophy syndrome Optic atrophy
1 gene
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1 of 1 corroborated by 2+ sources
NR2F1(6)
0.005 1.000 1.18e-2 1.32e-2 ✓ sig. —
CACNA2D4-related retinopathy Optic atrophy
1 gene
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1 of 1 corroborated by 2+ sources
0.005 1.000 1.18e-2 1.32e-2 ✓ sig. —
developmental and epileptic encephalopathy, 77 Optic atrophy
1 gene
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1 of 1 corroborated by 2+ sources
PIGQ(2)
0.005 1.000 1.18e-2 1.32e-2 ✓ sig. —
dilated cardiomyopathy 2B Optic atrophy
1 gene
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1 of 1 corroborated by 2+ sources
GATAD1(2)
0.005 1.000 1.18e-2 1.32e-2 ✓ sig. —
enhanced s-cone syndrome Optic atrophy
1 gene
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1 of 1 corroborated by 2+ sources
NR2E3(2)
0.005 1.000 1.18e-2 1.32e-2 ✓ sig. —
IDH3B-related retinopathy Optic atrophy
1 gene
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1 of 1 corroborated by 2+ sources
IDH3B(2)
0.005 1.000 1.18e-2 1.32e-2 ✓ sig. Cluster 7 →
Familial danish dementia Optic atrophy
1 gene
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1 of 1 corroborated by 2+ sources
ITM2B(2)
0.005 1.000 1.18e-2 1.32e-2 ✓ sig. —
FDXR-related optic atrophy mitochondrial dysfunction syndrome Optic atrophy
1 gene
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1 of 1 corroborated by 2+ sources
FDXR(2)
0.005 1.000 1.18e-2 1.32e-2 ✓ sig. —
Goldmann-favre syndrome Optic atrophy
1 gene
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1 of 1 corroborated by 2+ sources
NR2E3(3)
0.005 1.000 1.18e-2 1.32e-2 ✓ sig. —
GPR179-related retinopathy Optic atrophy
1 gene
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1 of 1 corroborated by 2+ sources
GPR179(2)
0.005 1.000 1.18e-2 1.32e-2 ✓ sig. —
GRM6-related retinopathy Optic atrophy
1 gene
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1 of 1 corroborated by 2+ sources
GRM6(2)
0.005 1.000 1.18e-2 1.32e-2 ✓ sig. —
Abri amyloidosis Optic atrophy
1 gene
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1 of 1 corroborated by 2+ sources
ITM2B(2)
0.005 1.000 1.18e-2 1.32e-2 ✓ sig. —
Costeff optic atrophy syndrome Optic atrophy
1 gene
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1 of 1 corroborated by 2+ sources
OPA3(7)
0.005 1.000 1.18e-2 1.32e-2 ✓ sig. —
Childhood-onset dystonia Optic atrophy
1 gene
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1 of 1 corroborated by 2+ sources
MECR(4)
0.005 1.000 1.18e-2 1.32e-2 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.