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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
Dopamine beta-hydroxy­lase deficiency Spinocerebellar ataxia
1 gene
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1 of 1 corroborated by 2+ sources
HSPA5(2)
0.009 0.500 1.35e-2 1.50e-2 ✓ sig. —
methylmalonic aciduria and homocystinuria Spinocerebellar ataxia
1 gene
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1 of 1 corroborated by 2+ sources
THAP11(3)
0.009 0.500 1.35e-2 1.50e-2 ✓ sig. —
Chromosomal disorder Vascular disease
1 gene
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COBL(1)
0.018 0.250 1.34e-2 1.50e-2 ✓ sig. —
Dermatologic disorder Paraquat lung disease
1 gene
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1 of 1 corroborated by 2+ sources
SKIL(2)
0.014 0.333 1.32e-2 1.47e-2 ✓ sig. —
Colonic neoplasms palatal anomalies-widely spaced teeth-facial dysmorphism-developmental delay syndrome
1 gene
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1 of 1 corroborated by 2+ sources
KDM1A(2)
0.005 1.000 1.32e-2 1.47e-2 ✓ sig. —
Iga nephropathy PAX5-related B lymphopenia and autism spectrum disorder
1 gene
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1 of 1 corroborated by 2+ sources
PAX5(2)
0.005 1.000 1.32e-2 1.47e-2 ✓ sig. —
Post-traumatic stress disorder Tolchin-le caignec syndrome
1 gene
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1 of 1 corroborated by 2+ sources
SOX6(4)
0.005 1.000 1.32e-2 1.47e-2 ✓ sig. —
Iga nephropathy TSPAN12-related exudative vitreoretinopathy
1 gene
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1 of 1 corroborated by 2+ sources
TSPAN12(2)
0.005 1.000 1.32e-2 1.47e-2 ✓ sig. —
Post-traumatic stress disorder Van esch-o’driscoll syndrome
1 gene
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1 of 1 corroborated by 2+ sources
POLA1(2)
0.005 1.000 1.32e-2 1.47e-2 ✓ sig. —
Colonic neoplasms X-linked common variable immunodeficiency phenotype due to sh3kbp1 deficiency
1 gene
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1 of 1 corroborated by 2+ sources
SH3KBP1(2)
0.005 1.000 1.32e-2 1.47e-2 ✓ sig. —
Post-traumatic stress disorder X-linked reticulate pigmentary disorder
1 gene
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1 of 1 corroborated by 2+ sources
POLA1(5)
0.005 1.000 1.32e-2 1.47e-2 ✓ sig. —
myopathy caused by variation in POMGNT2 Post-traumatic stress disorder
1 gene
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1 of 1 corroborated by 2+ sources
POMGNT2(2)
0.005 1.000 1.32e-2 1.47e-2 ✓ sig. —
osteopetrosis, autosomal dominant 3 Post-traumatic stress disorder
1 gene
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1 of 1 corroborated by 2+ sources
PLEKHM1(2)
0.005 1.000 1.32e-2 1.47e-2 ✓ sig. —
Colonic neoplasms Hmg-coa synthase deficiency
1 gene
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1 of 1 corroborated by 2+ sources
HMGCS2(3)
0.005 1.000 1.32e-2 1.47e-2 ✓ sig. Cluster 5 →
Colonic neoplasms immunodeficiency 109 with lymphoproliferation
1 gene
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1 of 1 corroborated by 2+ sources
TNFRSF9(2)
0.005 1.000 1.32e-2 1.47e-2 ✓ sig. Cluster 5 →
Colonic neoplasms immunodeficiency 61
1 gene
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1 of 1 corroborated by 2+ sources
SH3KBP1(2)
0.005 1.000 1.32e-2 1.47e-2 ✓ sig. —
Intellectual developmental disorder dysmorphic cardiac Post-traumatic stress disorder
1 gene
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1 of 1 corroborated by 2+ sources
TMEM94(4)
0.005 1.000 1.32e-2 1.47e-2 ✓ sig. —
Colonic neoplasms ITPKB deficiency
1 gene
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1 of 1 corroborated by 2+ sources
ITPKB(2)
0.005 1.000 1.32e-2 1.47e-2 ✓ sig. —
Colonic neoplasms Erythrocyte lactate transporter defect
1 gene
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1 of 1 corroborated by 2+ sources
SLC16A1(3)
0.005 1.000 1.32e-2 1.47e-2 ✓ sig. —
Colonic neoplasms Fatty acid and ketone body metabolism disorder
1 gene
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1 of 1 corroborated by 2+ sources
SLC16A1(2)
0.005 1.000 1.32e-2 1.47e-2 ✓ sig. —
Colonic neoplasms Fatty acid oxidation and ketone body metabolism disorder
1 gene
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1 of 1 corroborated by 2+ sources
SLC16A1(2)
0.005 1.000 1.32e-2 1.47e-2 ✓ sig. —
Colonic neoplasms fructose-1,6-bisphosphatase deficiency
1 gene
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1 of 1 corroborated by 2+ sources
FBP1(2)
0.005 1.000 1.32e-2 1.47e-2 ✓ sig. —
Gastroschisis Iga nephropathy
1 gene
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ADD1(1)
0.005 1.000 1.32e-2 1.47e-2 ✓ sig. —
Braddock-carey syndrome Iga nephropathy
1 gene
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1 of 1 corroborated by 2+ sources
KIF15(3)
0.005 1.000 1.32e-2 1.47e-2 ✓ sig. —
Central centrifugal cicatricial alopecia Iga nephropathy
1 gene
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1 of 1 corroborated by 2+ sources
PADI3(2)
0.005 1.000 1.32e-2 1.47e-2 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.